Conservation of cofitness between ECD_03421 and ECD_02888 in Escherichia coli BL21

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03421 xylose divergent operon transcriptional activator 1.0 ECD_02888 Radical SAM superfamily protein 0.47 15
Escherichia coli ECRC62 1.00 BNILDI_03665 xylR DNA-binding transcriptional regulator XylR 1.00 BNILDI_00820 ygiQ YgiQ family radical SAM protein low > 75
Escherichia coli ECRC101 1.00 MCAODC_06450 xylR DNA-binding transcriptional regulator XylR 0.99 MCAODC_09430 ygiQ YgiQ family radical SAM protein low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20410 D-xylose utilization transcriptional activator XylR 0.99 ECOLIN_RS17355 YgiQ family radical SAM protein low > 55
Escherichia coli ECOR38 1.00 HEPCGN_14820 xylR DNA-binding transcriptional regulator XylR 1.00 HEPCGN_17785 ygiQ YgiQ family radical SAM protein low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00135 Xylose operon regulatory protein 1.00 OHPLBJKB_00686 hypothetical protein low > 73
Escherichia coli ECRC98 1.00 JDDGAC_19565 xylR DNA-binding transcriptional regulator XylR 0.99 JDDGAC_22550 ygiQ YgiQ family radical SAM protein low > 86
Escherichia coli ECRC99 1.00 KEDOAH_12215 xylR DNA-binding transcriptional regulator XylR 0.99 KEDOAH_09230 ygiQ YgiQ family radical SAM protein — —
Escherichia coli ECRC102 1.00 NIAGMN_13695 xylR DNA-binding transcriptional regulator XylR 0.99 NIAGMN_16680 ygiQ YgiQ family radical SAM protein — —
Escherichia coli ECOR27 1.00 NOLOHH_07880 xylR DNA-binding transcriptional regulator XylR 1.00 NOLOHH_10695 ygiQ YgiQ family radical SAM protein low > 75
Escherichia coli ECRC100 1.00 OKFHMN_15935 xylR DNA-binding transcriptional regulator XylR 0.99 OKFHMN_18915 ygiQ YgiQ family radical SAM protein low > 80
Escherichia coli BW25113 1.00 b3569 xylR DNA-binding transcriptional activator, xylose-binding (NCBI) 1.00 b4469 ygiQ hypothetical protein (NCBI) low > 76
Escherichia fergusonii Becca 1.00 EFB2_00238 Xylose operon regulatory protein 1.00 EFB2_00795 hypothetical protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF442 Xylose activator XylR (AraC family) 0.93 GFF3129 Probable Fe-S oxidoreductase family 2 low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3834 Transcriptional regulators 0.92 EX28DRAFT_3051 uncharacterized radical SAM protein YgiQ low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_00161 Xylose operon regulatory protein 0.92 MPMX20_03857 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS27045 XylR family transcriptional regulator 0.93 BWI76_RS24310 YgiQ family radical SAM protein low > 92
Rahnella sp. WP5 0.84 EX31_RS09745 XylR family transcriptional regulator 0.80 EX31_RS04200 YgiQ family radical SAM protein low > 89
Serratia liquefaciens MT49 0.82 IAI46_00300 DNA-binding transcriptional regulator 0.82 IAI46_21835 YgiQ family radical SAM protein low > 86
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_2882 transcriptional regulator, AraC family 0.63 Psyr_0587 Radical SAM low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_2882 transcriptional regulator, AraC family 0.63 Psyr_0587 Radical SAM 0.28 47
Pseudomonas simiae WCS417 0.45 PS417_10950 AraC family transcriptional regulator 0.64 PS417_02590 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_28495 AraC family transcriptional regulator 0.64 AO356_08575 YgiQ family radical SAM protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_1453 Xylose activator XylR (AraC family) 0.64 Pf6N2E2_3600 Fe-S OXIDOREDUCTASE (1.8.-.-) low > 103
Pseudomonas sp. RS175 0.44 PFR28_02347 Xylose operon regulatory protein 0.64 PFR28_05137 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS11310 DNA-binding transcriptional regulator 0.64 PFLU_RS02660 YgiQ family radical SAM protein low > 109
Pseudomonas fluorescens SBW25 0.43 PFLU_RS11310 DNA-binding transcriptional regulator 0.64 PFLU_RS02660 YgiQ family radical SAM protein low > 109
Bacteroides ovatus ATCC 8483 0.17 BACOVA_03406 transcriptional regulator, AraC family 0.33 BACOVA_00405 putative radical SAM protein YgiQ low > 94
Bacteroides thetaiotaomicron VPI-5482 0.17 BT3609 transcriptional regulator (NCBI ptt file) 0.32 BT0254 putative Fe-S oxidoreductase (NCBI ptt file) low > 81

Not shown: 13 genomes with orthologs for ECD_03421 only; 25 genomes with orthologs for ECD_02888 only