Conservation of cofitness between ECD_02953 and ECD_02688 in Escherichia coli BL21

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent 1.0 ECD_02688 Asp/Glu_racemase family protein 0.54 8
Escherichia coli BW25113 1.00 b3084 ygjO putative enzyme (VIMSS) 0.99 b2840 ygeA predicted racemase (NCBI) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 HEPCGN_19575 ygeA amino acid racemase low > 87
Escherichia coli ECOR27 0.99 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 NOLOHH_11820 ygeA amino acid racemase low > 75
Escherichia coli ECRC62 0.99 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 BNILDI_10300 ygeA amino acid racemase low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS17790 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 ECOLIN_RS15940 amino acid racemase — —
Escherichia coli ECRC98 0.99 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 JDDGAC_23600 ygeA amino acid racemase low > 86
Escherichia coli ECRC102 0.99 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 NIAGMN_17705 ygeA amino acid racemase — —
Escherichia coli ECRC99 0.99 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 KEDOAH_08195 ygeA amino acid racemase — —
Escherichia coli ECRC100 0.99 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 OKFHMN_19935 ygeA amino acid racemase low > 80
Escherichia coli ECRC101 0.99 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 1.00 MCAODC_10460 ygeA amino acid racemase low > 87
Escherichia fergusonii Becca 0.99 EFB2_00728 Ribosomal RNA large subunit methyltransferase G 1.00 EFB2_01043 L-aspartate/glutamate-specific racemase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G 1.00 OHPLBJKB_00889 Putative racemase YgeA low > 73
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3153 16S RNA G1207 methylase RsmC 0.83 EX28DRAFT_2918 aspartate racemase low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_03995 Ribosomal RNA large subunit methyltransferase G 0.84 MPMX20_03707 L-aspartate/glutamate-specific racemase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF3186 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.83 GFF1325 Aspartate racemase (EC 5.1.1.13) low > 78
Klebsiella michiganensis M5al 0.71 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase 0.82 BWI76_RS23370 aspartate/glutamate racemase low > 92
Serratia liquefaciens MT49 0.67 IAI46_22185 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.61 IAI46_18225 aspartate/glutamate racemase family protein low > 86
Pectobacterium carotovorum WPP14 0.63 HER17_RS18680 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.62 HER17_RS15295 aspartate/glutamate racemase family protein low > 75
Pantoea sp. MT58 0.62 IAI47_02950 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.59 IAI47_18995 aspartate/glutamate racemase family protein low > 76
Dickeya dadantii 3937 0.61 DDA3937_RS02850 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.13 DDA3937_RS07385 aspartate/glutamate racemase family protein low > 74
Rahnella sp. WP5 0.58 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.62 EX31_RS20045 aspartate/glutamate racemase family protein low > 89
Dickeya dianthicola 67-19 0.58 HGI48_RS02825 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.13 HGI48_RS07250 aspartate/glutamate racemase family protein low > 71
Dickeya dianthicola ME23 0.58 DZA65_RS03000 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG 0.13 DZA65_RS07760 aspartate/glutamate racemase family protein low > 75
Alteromonas macleodii MIT1002 0.40 MIT1002_00689 Ribosomal RNA large subunit methyltransferase G 0.54 MIT1002_04020 Aspartate racemase low > 70
Shewanella amazonensis SB2B 0.36 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.53 Sama_2886 hypothetical protein (RefSeq) low > 62
Pseudomonas sp. S08-1 0.35 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase 0.57 OH686_18340 Aspartate racemase low > 80
Pseudomonas simiae WCS417 0.34 PS417_24335 50S rRNA methyltransferase 0.52 PS417_13940 racemase low > 88
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS26260 class I SAM-dependent methyltransferase 0.50 PFLU_RS14675 aspartate/glutamate racemase family protein low > 109
Pseudomonas fluorescens SBW25 0.34 PFLU_RS26260 class I SAM-dependent methyltransferase 0.50 PFLU_RS14675 aspartate/glutamate racemase family protein low > 109
Pseudomonas sp. RS175 0.33 PFR28_03798 Ribosomal RNA large subunit methyltransferase G 0.54 PFR28_02199 L-aspartate/glutamate-specific racemase low > 88
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) 0.55 Pf1N1B4_4650 Aspartate racemase (EC 5.1.1.13) low > 87
Marinobacter adhaerens HP15 0.22 HP15_2265 rRNA (guanine-N2-)-methyltransferase, RsmD 0.55 HP15_1403 aspartate racemase low > 73

Not shown: 13 genomes with orthologs for ECD_02953 only; 29 genomes with orthologs for ECD_02688 only