Conservation of cofitness between ECD_01302 and ECD_01276 in Escherichia coli BL21

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01302 L-Ala-D/L-Glu epimerase 1.0 ECD_01276 repressor for the divergent puu operons, putrescine inducible 0.67 14
Escherichia coli BW25113 1.00 b1325 ycjG putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS) 1.00 b1299 puuR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02357 L-Ala-D/L-Glu epimerase 1.00 OHPLBJKB_02383 HTH-type transcriptional regulator PuuR low > 73
Escherichia coli ECOR27 1.00 NOLOHH_19990 ycjG L-Ala-D/L-Glu epimerase 1.00 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR — —
Escherichia coli ECRC102 0.99 NIAGMN_26465 ycjG L-Ala-D/L-Glu epimerase 1.00 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR — —
Escherichia coli ECRC101 0.99 MCAODC_15975 ycjG L-Ala-D/L-Glu epimerase 1.00 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR — —
Escherichia coli ECRC99 0.99 KEDOAH_26480 ycjG L-Ala-D/L-Glu epimerase 1.00 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR — —
Escherichia coli ECRC101 0.99 OKFHMN_02295 ycjG L-Ala-D/L-Glu epimerase 1.00 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR — —
Escherichia coli ECRC98 0.99 JDDGAC_04840 ycjG L-Ala-D/L-Glu epimerase 1.00 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR — —
Escherichia coli ECOR38 0.99 HEPCGN_25895 ycjG L-Ala-D/L-Glu epimerase 1.00 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR low > 85
Escherichia coli ECRC62 0.99 BNILDI_18140 ycjG L-Ala-D/L-Glu epimerase 1.00 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR — —
Klebsiella michiganensis M5al 0.79 BWI76_RS12500 dipeptide epimerase 0.97 BWI76_RS10700 XRE family transcriptional regulator low > 92
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0997 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 0.97 EX28DRAFT_1500 Predicted transcriptional regulators low > 76
Serratia liquefaciens MT49 0.72 IAI46_13460 L-Ala-D/L-Glu epimerase 0.86 IAI46_10550 HTH-type transcriptional regulator PuuR low > 86
Pantoea sp. MT58 0.72 IAI47_09450 L-Ala-D/L-Glu epimerase 0.71 IAI47_07115 HTH-type transcriptional regulator PuuR low > 76
Rahnella sp. WP5 0.67 EX31_RS06345 L-Ala-D/L-Glu epimerase 0.79 EX31_RS17905 HTH-type transcriptional regulator PuuR low > 89
Sinorhizobium meliloti 1021 0.40 SMc00459 hypothetical protein 0.29 SMc04387 aldehyde dehydrogenase low > 103
Agrobacterium fabrum C58 0.39 Atu1648 mandelate racemase/muconate lactonizing enzyme family protein 0.28 Atu3328 aldehyde dehydrogenase low > 89
Rhodospirillum rubrum S1H 0.37 Rru_A2556 Mandelate racemase/muconate lactonizing enzyme (NCBI) 0.30 Rru_A2042 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) low > 58
Azospirillum brasilense Sp245 0.36 AZOBR_RS05375 mandelate racemase 0.31 AZOBR_RS19640 aldehyde dehydrogenase low > 97
Azospirillum sp. SherDot2 0.32 MPMX19_00570 L-Ala-D/L-Glu epimerase 0.33 MPMX19_04921 HTH-type transcriptional regulator PuuR low > 112
Fusobacterium nucleatum SB010 0.16 HUW76_09695 dipeptide epimerase 0.18 HUW76_01135 cupin domain-containing protein low > 35
Burkholderia phytofirmans PsJN 0.11 BPHYT_RS10675 muconate cycloisomerase 0.35 BPHYT_RS23170 XRE family transcriptional regulator low > 109
Pseudomonas putida KT2440 0.10 PP_3715 Muconate cycloisomerase 1 0.37 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine low > 96
Pseudomonas fluorescens SBW25 0.10 PFLU_RS25480 muconate cycloisomerase 0.36 PFLU_RS29365 cupin domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.10 PFLU_RS25480 muconate cycloisomerase 0.36 PFLU_RS29365 cupin domain-containing protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.09 AO353_23515 muconate cycloisomerase 0.37 AO353_09140 XRE family transcriptional regulator low > 101

Not shown: 28 genomes with orthologs for ECD_01302 only; 23 genomes with orthologs for ECD_01276 only