Conservation of cofitness between ECD_04080 and ECD_00119 in Escherichia coli BL21

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_04080 D-alanine/D-serine/glycine transporter 1.0 ECD_00119 S-adenosylmethionine decarboxylase 0.53 24
Escherichia coli ECRC98 1.00 JDDGAC_15710 cycA D-serine/D-alanine/glycine transporter 1.00 JDDGAC_14065 speD adenosylmethionine decarboxylase low > 86
Escherichia coli BW25113 1.00 b4208 cycA D-alanine/D-serine/glycine transporter (NCBI) 1.00 b0120 speD S-adenosylmethionine decarboxylase proenzyme (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_12070 cycA D-serine/D-alanine/glycine transporter 1.00 OKFHMN_10470 speD adenosylmethionine decarboxylase low > 80
Escherichia coli ECRC101 1.00 MCAODC_02585 cycA D-serine/D-alanine/glycine transporter 1.00 MCAODC_00985 speD adenosylmethionine decarboxylase low > 87
Escherichia coli ECRC62 1.00 BNILDI_07190 cycA D-serine/D-alanine/glycine transporter 1.00 BNILDI_08795 speD adenosylmethionine decarboxylase low > 75
Escherichia coli ECOR27 1.00 NOLOHH_04330 cycA D-serine/D-alanine/glycine transporter 1.00 NOLOHH_02815 speD adenosylmethionine decarboxylase low > 75
Escherichia coli ECRC102 1.00 NIAGMN_09920 cycA D-serine/D-alanine/glycine transporter 1.00 NIAGMN_08320 speD adenosylmethionine decarboxylase — —
Escherichia coli ECRC99 1.00 KEDOAH_16085 cycA D-serine/D-alanine/glycine transporter 1.00 KEDOAH_17685 speD adenosylmethionine decarboxylase — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS24450 D-serine/D-alanine/glycine transporter 0.99 ECOLIN_RS00670 adenosylmethionine decarboxylase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03827 D-serine/D-alanine/glycine transporter 1.00 OHPLBJKB_03541 S-adenosylmethionine decarboxylase proenzyme low > 73
Escherichia fergusonii Becca 0.99 EFB2_04320 D-serine/D-alanine/glycine transporter 1.00 EFB2_03925 S-adenosylmethionine decarboxylase proenzyme low > 86
Escherichia coli ECOR38 0.99 HEPCGN_10275 cycA D-serine/D-alanine/glycine transporter 1.00 HEPCGN_08450 speD adenosylmethionine decarboxylase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF861 D-serine/D-alanine/glycine transporter 0.98 GFF108 S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A low > 78
Enterobacter sp. TBS_079 0.96 MPMX20_00484 D-serine/D-alanine/glycine transporter 0.95 MPMX20_00814 S-adenosylmethionine decarboxylase proenzyme low > 85
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3391 Gamma-aminobutyrate permease and related permeases 0.96 EX28DRAFT_3717 S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS02700 D-serine/D-alanine/glycine transporter 0.95 BWI76_RS04920 S-adenosylmethionine decarboxylase low > 92
Serratia liquefaciens MT49 0.85 IAI46_09060 D-serine/D-alanine/glycine transporter 0.89 IAI46_21295 adenosylmethionine decarboxylase low > 86
Rahnella sp. WP5 0.80 EX31_RS24110 D-serine/D-alanine/glycine transporter 0.89 EX31_RS03380 adenosylmethionine decarboxylase low > 89
Pectobacterium carotovorum WPP14 0.78 HER17_RS07690 D-serine/D-alanine/glycine transporter 0.87 HER17_RS05500 adenosylmethionine decarboxylase low > 75
Erwinia tracheiphila SCR3 0.76 LU632_RS10160 cycA D-serine/D-alanine/glycine transporter 0.87 LU632_RS20155 speD adenosylmethionine decarboxylase low > 74
Dickeya dadantii 3937 0.76 DDA3937_RS13720 D-serine/D-alanine/glycine transporter 0.87 DDA3937_RS16015 adenosylmethionine decarboxylase low > 74
Pantoea sp. MT58 0.76 IAI47_12495 D-serine/D-alanine/glycine transporter 0.91 IAI47_15715 adenosylmethionine decarboxylase low > 76
Dickeya dianthicola ME23 0.73 DZA65_RS14305 D-serine/D-alanine/glycine transporter 0.87 DZA65_RS17220 adenosylmethionine decarboxylase low > 75
Dickeya dianthicola 67-19 0.71 HGI48_RS13815 D-serine/D-alanine/glycine transporter 0.87 HGI48_RS16135 adenosylmethionine decarboxylase 0.63 37
Rhodanobacter denitrificans MT42 0.65 LRK55_RS15360 D-serine/D-alanine/glycine transporter 0.62 LRK55_RS11320 adenosylmethionine decarboxylase — —
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS15610 D-serine/D-alanine/glycine transporter 0.62 LRK54_RS11590 adenosylmethionine decarboxylase — —
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.804.1 D-serine/D-alanine/glycine transporter 0.65 Xcc-8004.625.1 S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A — —
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_04305 cycA D-serine/D-alanine/glycine transporter 0.62 OKGIIK_12265 speD adenosylmethionine decarboxylase — —
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_25190 amino acid transporter 0.69 AO353_07190 S-adenosylmethionine decarboxylase proenzyme low > 101

Not shown: 11 genomes with orthologs for ECD_04080 only; 7 genomes with orthologs for ECD_00119 only