Conservation of cofitness between CSW01_02495 and CSW01_15015 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.0 CSW01_15015 anaerobic C4-dicarboxylate transporter 0.44 6
Klebsiella michiganensis M5al 0.72 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.42 BWI76_RS01510 anaerobic C4-dicarboxylate transporter low > 92
Escherichia coli ECRC102 0.72 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 NIAGMN_10365 dcuB anaerobic C4-dicarboxylate transporter DcuB — —
Escherichia coli ECRC101 0.72 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 MCAODC_03030 dcuB anaerobic C4-dicarboxylate transporter DcuB low > 87
Escherichia coli Nissle 1917 0.72 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 ECOLIN_RS23855 anaerobic C4-dicarboxylate transporter DcuB low > 55
Escherichia fergusonii Becca 0.72 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 0.41 EFB2_04460 Anaerobic C4-dicarboxylate transporter DcuB low > 86
Escherichia coli BW25113 0.72 b2946 yggJ orf, hypothetical protein (VIMSS) 0.41 b4123 dcuB C4-dicarboxylate antiporter (NCBI) low > 76
Escherichia coli BL21 0.72 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 0.41 ECD_03994 C4-dicarboxylate transporter, anaerobic; DcuS co-sensor low > 61
Escherichia coli ECRC98 0.72 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 JDDGAC_16155 dcuB anaerobic C4-dicarboxylate transporter DcuB low > 86
Escherichia coli ECOR27 0.72 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 NOLOHH_04785 dcuB anaerobic C4-dicarboxylate transporter DcuB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 0.41 OHPLBJKB_03921 Anaerobic C4-dicarboxylate transporter DcuB low > 73
Escherichia coli ECRC99 0.72 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 KEDOAH_15645 dcuB anaerobic C4-dicarboxylate transporter DcuB — —
Escherichia coli ECRC100 0.72 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 OKFHMN_12520 dcuB anaerobic C4-dicarboxylate transporter DcuB low > 80
Escherichia coli ECRC62 0.72 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 BNILDI_06705 dcuB anaerobic C4-dicarboxylate transporter DcuB low > 75
Escherichia coli ECOR38 0.72 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 0.41 HEPCGN_11155 dcuB anaerobic C4-dicarboxylate transporter DcuB low > 87
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.49 EX28DRAFT_0650 anaerobic c4-dicarboxylate membrane transporter family protein low > 76
Serratia liquefaciens MT49 0.70 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.49 IAI46_03950 anaerobic C4-dicarboxylate transporter low > 86
Enterobacter sp. TBS_079 0.70 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.49 MPMX20_02811 Anaerobic C4-dicarboxylate transporter DcuB low > 85
Dickeya dadantii 3937 0.69 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.42 DDA3937_RS07545 anaerobic C4-dicarboxylate transporter low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.41 GFF1478 C4-dicarboxylate transporter DcuB low > 78
Dickeya dianthicola ME23 0.67 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.42 DZA65_RS07920 anaerobic C4-dicarboxylate transporter low > 75
Dickeya dianthicola 67-19 0.67 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.42 HGI48_RS07410 anaerobic C4-dicarboxylate transporter low > 71
Pectobacterium carotovorum WPP14 0.67 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.43 HER17_RS14090 anaerobic C4-dicarboxylate transporter 0.46 49
Shewanella sp. ANA-3 0.66 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.50 Shewana3_0293 anaerobic C4-dicarboxylate transporter (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) 0.50 SO4417 dcuB anaerobic C4-dicarboxylate membrane transporter (NCBI ptt file) low > 76
Parabacteroides merdae CL09T00C40 0.23 HMPREF1078_RS10135 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.41 HMPREF1078_RS14390 anaerobic C4-dicarboxylate transporter low > 61
Bacteroides stercoris CC31F 0.19 HMPREF1181_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.42 HMPREF1181_RS11255 anaerobic C4-dicarboxylate transporter low > 56
Phocaeicola dorei CL03T12C01 0.18 ABI39_RS18150 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.42 ABI39_RS14320 anaerobic C4-dicarboxylate transporter low > 72
Phocaeicola vulgatus CL09T03C04 0.18 HMPREF1058_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.43 HMPREF1058_RS18005 anaerobic C4-dicarboxylate transporter low > 67
Bacteroides ovatus ATCC 8483 0.17 BACOVA_05130 RNA methyltransferase, RsmE family 0.43 BACOVA_01070 hypothetical protein low > 94
Bacteroides thetaiotaomicron VPI-5482 0.17 BT4328 conserved hypothetical protein (NCBI ptt file) 0.43 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) low > 81

Not shown: 77 genomes with orthologs for CSW01_02495 only; 0 genomes with orthologs for CSW01_15015 only