Conservation of cofitness between CSW01_01875 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01875 hypothetical protein 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.85 7
Rahnella sp. WP5 0.66 EX31_RS04470 transcriptional regulator 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.66 HGI48_RS19440 transcriptional regulator 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Serratia liquefaciens MT49 0.66 IAI46_23490 transcriptional regulator 0.76 IAI46_23685 ribulose-phosphate 3-epimerase low > 87
Dickeya dianthicola ME23 0.66 DZA65_RS20560 transcriptional regulator 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila SCR3 0.66 LU632_RS22710 transcriptional regulator 0.76 LU632_RS22850 rpe ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila HP pepo 2.2 0.66 IJEDHG_12210 Uncharacterized protein YheO 0.76 IJEDHG_12050 rpe ribulose-phosphate 3-epimerase — —
Dickeya dadantii 3937 0.66 DDA3937_RS19340 transcriptional regulator 0.75 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Erwinia amylovora T8 0.66 OLJFJH_03930 Uncharacterized protein YheO 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase — —
Pectobacterium carotovorum WPP14 0.65 HER17_RS02010 transcriptional regulator 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Pantoea agglomerans CFBP13505 P0401 0.65 PagCFBP13505_RS21525 transcriptional regulator 0.76 PagCFBP13505_RS21685 ribulose-phosphate 3-epimerase — —
Pantoea sp. MT58 0.65 IAI47_02055 transcriptional regulator 0.76 IAI47_01910 ribulose-phosphate 3-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF3726 YheO-like PAS domain 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Escherichia coli ECOR38 0.64 HEPCGN_16130 yheO Uncharacterized protein YheO 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_00357 Transcriptional regulator DauR 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC101 0.64 MCAODC_07830 yheO Uncharacterized protein YheO 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 0.64 OKFHMN_17300 yheO Uncharacterized protein YheO 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC62 0.64 BNILDI_02420 yheO Uncharacterized protein YheO 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC102 0.64 NIAGMN_15070 yheO Uncharacterized protein YheO 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia fergusonii Becca 0.64 EFB2_00477 Transcriptional regulator DauR 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC98 0.64 JDDGAC_20930 yheO Uncharacterized protein YheO 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 0.64 KEDOAH_10840 yheO Uncharacterized protein YheO 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Klebsiella pneumoniae MKP103 0.64 KDGMDA_06760 Uncharacterized protein YheO 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase — —
Escherichia coli ECOR27 0.64 NOLOHH_09100 yheO Uncharacterized protein YheO 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 0.64 ECOLIN_RS19165 transcriptional regulator 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Escherichia coli BW25113 0.64 b3346 yheO orf, hypothetical protein (VIMSS) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Escherichia coli BL21 0.64 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Klebsiella michiganensis M5al 0.64 BWI76_RS25905 hypothetical protein 0.77 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Enterobacter asburiae PDN3 0.64 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria 0.78 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Enterobacter sp. TBS_079 0.64 MPMX20_04239 Transcriptional regulator DauR 0.77 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Shewanella oneidensis MR-1 0.35 SO1402 conserved hypothetical protein (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.35 Shewana3_2973 YheO domain-containing protein (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2206 conserved hypothetical protein (TIGR) 0.44 DVU2531 rpe ribulose-phosphate 3-epimerase (TIGR) — —
Acinetobacter baumannii LAC-4 0.18 RR41_RS05440 PAS domain-containing protein 0.75 RR41_RS15745 ribulose-phosphate 3-epimerase — —
Fusobacterium nucleatum SB010 0.17 HUW76_09955 PAS domain-containing protein 0.41 HUW76_06410 ribulose-phosphate 3-epimerase — —
Rhizobium sp. OAE497 0.16 ABIE40_RS21180 PAS domain-containing protein 0.44 ABIE40_RS10105 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. BP01 0.16 JOY50_RS24520 transcriptional regulator 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.16 AO353_04640 hypothetical protein 0.70 AO353_07240 ribulose phosphate epimerase — —
Ralstonia solanacearum GMI1000 0.16 RS_RS24435 DNA-binding protein 0.63 RS_RS14420 ribulose-phosphate 3-epimerase — —
Pseudomonas putida KT2440 0.16 PP_2931 conserved protein of unknown function 0.71 PP_0415 ribulose-5-phosphate 3-epimerase — —
Ralstonia solanacearum UW163 0.16 UW163_RS17980 DNA-binding protein 0.64 UW163_RS07150 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_1693 YheO-like PAS domain 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Ralstonia solanacearum IBSBF1503 0.16 RALBFv3_RS16625 DNA-binding protein 0.64 RALBFv3_RS06475 ribulose-phosphate 3-epimerase — —
Acidovorax sp. GW101-3H11 0.15 Ac3H11_38 YheO-like PAS domain 0.57 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Paraburkholderia sabiae LMG 24235 0.15 QEN71_RS18565 PAS domain-containing protein 0.66 QEN71_RS27540 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25 0.15 PFLU_RS13585 DNA-binding protein 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Ralstonia sp. UNC404CL21Col 0.15 ABZR87_RS17665 PAS domain-containing protein 0.64 ABZR87_RS02130 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N1B4 0.15 Pf1N1B4_923 YheO-like PAS domain 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas fluorescens SBW25-INTG 0.15 PFLU_RS13585 DNA-binding protein 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas simiae WCS417 0.15 PS417_12915 DNA-binding protein 0.71 PS417_25735 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. SVBP6 0.15 COO64_RS25095 transcriptional regulator 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase low > 93
Pseudomonas aeruginosa PA14 0.15 IKLFDK_19905 Transcriptional regulator DauR 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa MRSN321 0.15 DY961_RS13545 dauR;inference=COORDINATES transcriptional regulator DauR 0.70 DY961_RS23065 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PUPa3 0.15 DQ20_RS48840 dauR;inference=COORDINATES transcriptional regulator DauR 0.70 DQ20_RS36285 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas sp. DMC3 0.15 GFF1929 Transcriptional regulator DauR 0.69 GFF22 Ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum PSI07 0.15 RPSI07_RS06825 DNA-binding protein 0.64 RPSI07_RS10765 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.14 Pf6N2E2_5396 YheO-like PAS domain 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS11120 DNA-binding protein 0.68 RR42_RS18285 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. S08-1 0.14 OH686_07030 YheO-like PAS domain 0.70 OH686_15115 ribulose-phosphate 3-epimerase — —
Herbaspirillum seropedicae SmR1 0.14 HSERO_RS01425 DNA-binding protein 0.67 HSERO_RS19425 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2C3 0.14 AO356_17355 hypothetical protein 0.70 AO356_14410 ribulose phosphate epimerase — —
Sinorhizobium meliloti 1021 0.13 SMc04327 hypothetical protein 0.44 SMc00511 D-ribulose-5-phosphate 3-epimerase low > 103
Pseudomonas sp. RS175 0.13 PFR28_03547 Transcriptional regulator DauR 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Burkholderia phytofirmans PsJN 0.13 BPHYT_RS28105 hypothetical protein 0.67 BPHYT_RS17380 ribulose-phosphate 3-epimerase — —
Paraburkholderia bryophila 376MFSha3.1 0.12 H281DRAFT_05884 Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains 0.66 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase 0.33 90
Paraburkholderia graminis OAS925 0.12 ABIE53_005722 putative transcriptional regulator YheO 0.66 ABIE53_003638 ribulose-phosphate 3-epimerase low > 113
Variovorax sp. SCN45 0.12 GFF2493 YheO-like PAS domain 0.59 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 127

Not shown: 0 genomes with orthologs for CSW01_01875 only; 56 genomes with orthologs for CSW01_13285 only