Conservation of cofitness between CSW01_07545 and CSW01_10020 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 CSW01_10020 ROK family protein 0.71 14
Escherichia coli ECRC101 0.55 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 MCAODC_17670 mlc DNA-binding transcriptional repressor Mlc low > 88
Escherichia coli ECRC102 0.54 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 NIAGMN_00335 mlc DNA-binding transcriptional repressor Mlc — —
Escherichia coli ECRC100 0.54 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 OKFHMN_27740 mlc DNA-binding transcriptional repressor Mlc — —
Escherichia coli ECRC98 0.54 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 JDDGAC_02330 mlc DNA-binding transcriptional repressor Mlc low > 87
Escherichia coli ECRC99 0.54 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 KEDOAH_00365 mlc DNA-binding transcriptional repressor Mlc — —
Escherichia coli ECOR38 0.54 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 HEPCGN_06115 mlc DNA-binding transcriptional repressor Mlc low > 88
Escherichia coli ECRC62 0.54 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 BNILDI_17035 mlc DNA-binding transcriptional repressor Mlc low > 75
Escherichia coli ECOR27 0.54 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 NOLOHH_18245 mlc DNA-binding transcriptional repressor Mlc — —
Escherichia coli BL21 0.54 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.46 ECD_01563 glucosamine anaerobic growth regulon transcriptional repressor; autorepressor — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 ECOLIN_RS08905 sugar metabolism global transcriptional regulator Mlc — —
Escherichia coli BW25113 0.54 b1835 yebU putative nucleolar proteins (VIMSS) 0.46 b1594 dgsA DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.46 OHPLBJKB_02132 Protein mlc low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.47 GFF1785 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon low > 78
Escherichia fergusonii Becca 0.54 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.47 EFB2_02398 Protein mlc low > 86
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.45 PagCFBP13505_RS06405 ROK family transcriptional regulator low > 74
Pantoea sp. MT58 0.53 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.45 IAI47_09750 ROK family transcriptional regulator low > 76
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.48 EX28DRAFT_1493 Transcriptional regulator/sugar kinase low > 76
Serratia liquefaciens MT49 0.52 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.50 IAI46_11685 ROK family transcriptional regulator low > 86
Enterobacter sp. TBS_079 0.52 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.47 MPMX20_02063 Protein mlc 0.28 81
Dickeya dadantii 3937 0.51 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.50 DDA3937_RS10675 ROK family transcriptional regulator low > 74
Pectobacterium carotovorum WPP14 0.51 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.50 HER17_RS10735 ROK family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.49 HGI48_RS10675 ROK family transcriptional regulator low > 71
Klebsiella michiganensis M5al 0.51 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.47 BWI76_RS15955 transcriptional regulator low > 92
Erwinia amylovora T8 0.51 OLJFJH_12985 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.48 OLJFJH_14275 transcriptional regulator low > 58
Dickeya dianthicola ME23 0.51 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.49 DZA65_RS11145 ROK family transcriptional regulator low > 75
Rahnella sp. WP5 0.50 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.50 EX31_RS16985 ROK family transcriptional regulator low > 89
Klebsiella pneumoniae MKP103 0.50 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.48 KDGMDA_21230 transcriptional regulator low > 95
Bacteroides thetaiotaomicron VPI-5482 0.16 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.17 BT0433 putative xylose repressor (NCBI ptt file) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_05610 rRNA methyltransferase 0.20 CA264_08710 sugar kinase low > 74
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase 0.17 HMPREF1181_RS04110 ROK family transcriptional regulator low > 56
Bacteroides ovatus ATCC 8483 0.15 BACOVA_00671 NOL1/NOP2/sun family protein 0.18 BACOVA_01791 hypothetical protein low > 96
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase 0.19 HMPREF1078_RS06205 ROK family transcriptional regulator low > 61
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase 0.18 HMPREF1058_RS07285 ROK family transcriptional regulator low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS09930 rRNA cytosine-C5-methyltransferase 0.18 ABI39_RS21185 ROK family transcriptional regulator low > 72

Not shown: 8 genomes with orthologs for CSW01_07545 only; 11 genomes with orthologs for CSW01_10020 only