Conservation of cofitness between CSW01_12860 and CSW01_00015 in Vibrio cholerae E7946 ATCC 55056

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12860 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 1.0 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.75 18
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03591 hypothetical protein 0.76 OHPLBJKB_04346 tRNA modification GTPase MnmE — —
Escherichia coli ECOR27 0.40 NOLOHH_03105 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Escherichia coli ECRC62 0.40 BNILDI_08505 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 BNILDI_04405 tRNA modification GTPase MnmE low > 75
Escherichia coli Nissle 1917 0.40 ECOLIN_RS00365 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 55
Escherichia coli BL21 0.40 ECD_00069 thiamine/thiamine pyrophosphate ABC transporter permease 0.76 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase low > 61
Escherichia fergusonii Becca 0.40 EFB2_03978 hypothetical protein 0.76 EFB2_04925 tRNA modification GTPase MnmE low > 86
Escherichia coli ECOR38 0.39 HEPCGN_08740 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 HEPCGN_13680 tRNA modification GTPase MnmE low > 88
Escherichia coli ECRC101 0.39 MCAODC_01275 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 MCAODC_05495 tRNA modification GTPase MnmE — —
Escherichia coli ECRC102 0.39 NIAGMN_08610 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 NIAGMN_12740 tRNA modification GTPase MnmE — —
Escherichia coli BW25113 0.39 b0067 thiP thiamin ABC transporter membrane protein (NCBI) 0.76 b3706 trmE tRNA modification GTPase (NCBI) low > 76
Escherichia coli ECRC99 0.39 KEDOAH_17395 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 KEDOAH_13165 tRNA modification GTPase MnmE — —
Escherichia coli ECRC98 0.39 JDDGAC_14355 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 JDDGAC_18605 tRNA modification GTPase MnmE — —
Escherichia coli ECRC100 0.39 OKFHMN_10760 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 OKFHMN_14985 tRNA modification GTPase MnmE — —
Enterobacter sp. TBS_079 0.39 MPMX20_00761 hypothetical protein 0.75 MPMX20_04650 tRNA modification GTPase MnmE low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF173 Thiamin ABC transporter, transmembrane component 0.76 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 78
Enterobacter asburiae PDN3 0.39 EX28DRAFT_3659 thiamine ABC transporter, permease protein 0.75 EX28DRAFT_3993 tRNA modification GTPase TrmE — —
Rahnella sp. WP5 0.38 EX31_RS03725 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.75 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 89
Klebsiella pneumoniae MKP103 0.38 KDGMDA_12835 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.75 KDGMDA_08700 tRNA modification GTPase MnmE low > 95
Klebsiella michiganensis M5al 0.38 BWI76_RS04610 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.77 BWI76_RS00050 tRNA modification GTPase — —
Erwinia amylovora T8 0.38 OLJFJH_01320 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.74 OLJFJH_05190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Serratia liquefaciens MT49 0.38 IAI46_03310 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.75 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 86
Pectobacterium carotovorum WPP14 0.37 HER17_RS03030 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.75 HER17_RS21825 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Pantoea agglomerans CFBP13505 P0401 0.37 PagCFBP13505_RS12960 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.74 PagCFBP13505_RS19345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Dickeya dianthicola 67-19 0.36 HGI48_RS18105 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.75 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 71
Pantoea sp. MT58 0.36 IAI47_16035 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.73 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Erwinia tracheiphila SCR3 0.36 LU632_RS02830 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.73 LU632_RS25300 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_06045 thiP thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.73 IJEDHG_09755 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Dickeya dianthicola ME23 0.35 DZA65_RS19255 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.75 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Dickeya dadantii 3937 0.35 DDA3937_RS18160 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.76 DDA3937_RS21310 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 74
Rhizobium sp. OAE497 0.30 ABIE40_RS18630 thiamine/thiamine pyrophosphate ABC transporter permease ThiP 0.28 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 107
Sinorhizobium meliloti 1021 0.30 SMc03870 thiamine transporter membrane protein 0.28 SMc02797 tRNA modification GTPase TrmE — —
Agrobacterium fabrum C58 0.28 Atu2713 ABC transporter, membrane spanning protein (thiamine) 0.28 Atu2832 tRNA modification GTPase low > 89
Phaeobacter inhibens DSM 17395 0.27 PGA1_c34040 thiamine transport system permease protein ThiP 0.26 PGA1_c35110 tRNA modification GTPase MnmE — —

Not shown: 0 genomes with orthologs for CSW01_12860 only; 83 genomes with orthologs for CSW01_00015 only