Conservation of cofitness between BBR_RS19685 and BBR_RS19240 in Bifidobacterium breve UCC2003

20 genomes with putative orthologs of both genes

Organism	Ratio1	Gene1	Name1	Description1	Ratio2	Gene2	Name2	Description2	Cofit	Rank
Bifidobacterium breve UCC2003	1.0	BBR_RS19685		23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	1.0	BBR_RS19240		LacI family transcriptional regulator	0.66	7
Rhizobium sp. OAE497	0.28	ABIE40_RS18965		23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.23	ABIE40_RS25505		LacI family DNA-binding transcriptional regulator	low	> 107
Shewanella oneidensis MR-1	0.28	SO1169		conserved hypothetical protein TIGR00246 (NCBI ptt file)	0.19	SO2244		transcriptional regulator, LacI family (NCBI ptt file)	low	> 76
Shewanella amazonensis SB2B	0.28	Sama_2587		rRNA large subunit methyltransferase (RefSeq)	0.20	Sama_1655		LacI family transcription regulator (RefSeq)	low	> 62
Shewanella sp. ANA-3	0.28	Shewana3_0996		rRNA large subunit methyltransferase (RefSeq)	0.19	Shewana3_2252		LacI family transcription regulator (RefSeq)	low	> 73
Rhodanobacter denitrificans FW104-10B01	0.26	LRK54_RS02695		23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.18	LRK54_RS04995		LacI family DNA-binding transcriptional regulator	low	> 59
Rhodanobacter denitrificans MT42	0.26	LRK55_RS02450		23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.18	LRK55_RS04775		LacI family DNA-binding transcriptional regulator	low	> 63
Alteromonas macleodii MIT1002	0.26	MIT1002_01852		Ribosomal RNA large subunit methyltransferase H	0.19	MIT1002_00186		Mgl repressor and galactose ultrainduction factor	—	—
Dyella japonica UNC79MFTsu3.2	0.26	ABZR86_RS09055		23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.20	ABZR86_RS11035		LacI family DNA-binding transcriptional regulator	low	> 74
Rhodanobacter sp. FW510-T8	0.25	OKGIIK_09750	rlmH	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.17	OKGIIK_01750	purR	LacI family transcriptional regulator	low	> 52
Xanthomonas campestris pv. campestris strain 8004	0.25	Xcc-8004.1876.1		LSU m3Psi1915 methyltransferase RlmH	0.20	Xcc-8004.1019.1		hypothetical protein	—	—
Escherichia coli BW25113	0.24	b0636	ybeA	hypothetical protein (NCBI)	0.19	b3753	rbsR	DNA-binding transcriptional repressor of ribose metabolism (NCBI)	low	> 76
Escherichia coli Nissle 1917	0.24	ECOLIN_RS03465		23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.19	ECOLIN_RS21575		ribose operon transcriptional repressor RbsR	—	—
Escherichia fergusonii Becca	0.24	EFB2_03456		Ribosomal RNA large subunit methyltransferase H	0.19	EFB2_04880		Ribose operon repressor	low	> 86
Escherichia coli ECOR38	0.24	HEPCGN_00915	rlmH	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.19	HEPCGN_13435	rbsR	ribose operon transcriptional repressor RbsR	low	> 87
Escherichia coli ECRC101	0.24	MCAODC_26575	rlmH	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.19	MCAODC_05230	rbsR	ribose operon transcriptional repressor RbsR	low	> 87
Escherichia coli ECRC100	0.24	OKFHMN_07360	rlmH	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.19	OKFHMN_14725	rbsR	ribose operon transcriptional repressor RbsR	low	> 80
Escherichia coli ECRC98	0.24	JDDGAC_11005	rlmH	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.19	JDDGAC_18345	rbsR	ribose operon transcriptional repressor RbsR	—	—
Escherichia coli ECRC99	0.24	KEDOAH_20610	rlmH	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.19	KEDOAH_13425	rbsR	ribose operon transcriptional repressor RbsR	—	—
Escherichia coli ECRC102	0.24	NIAGMN_05415	rlmH	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.19	NIAGMN_12480	rbsR	ribose operon transcriptional repressor RbsR	—	—
Escherichia coli ECOR27	0.24	NOLOHH_23735	rlmH	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	0.19	NOLOHH_06860	rbsR	ribose operon transcriptional repressor RbsR	low	> 75

Not shown: 77 genomes with orthologs for BBR_RS19685 only; 3 genomes with orthologs for BBR_RS19240 only