Conservation of cofitness between Shewana3_2385 and Shewana3_2089 in Shewanella sp. ANA-3

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella sp. ANA-3 1.0 Shewana3_2385 ribonuclease D (RefSeq) 1.0 Shewana3_2089 formate dehydrogenase alpha subunit (RefSeq) 0.49 18
Shewanella oneidensis MR-1 0.90 SO2580 rnd ribonuclease D (NCBI ptt file) 0.73 SO0101 fdnG selenium-containing formate dehydrogenase, nitrate inducible, alpha subunit (NCBI ptt file) low > 76
Escherichia coli BW25113 0.35 b1804 rnd ribonuclease D (NCBI) 0.62 b1474 fdnG formate dehydrogenase-N, alpha subunit, nitrate-inducible (NCBI) low > 76
Escherichia coli BL21 0.35 ECD_01774 ribonuclease D 0.62 ECD_01432 formate dehydrogenase-N, alpha subunit, nitrate-inducible low > 61
Escherichia coli ECOR38 0.35 HEPCGN_04995 rnd ribonuclease D 0.62 HEPCGN_26400 fdnG formate dehydrogenase-N subunit alpha low > 87
Escherichia coli ECRC99 0.35 KEDOAH_01505 rnd ribonuclease D 0.62 KEDOAH_27055 fdnG formate dehydrogenase-N subunit alpha — —
Escherichia coli ECOR27 0.35 NOLOHH_17125 rnd ribonuclease D 0.62 NOLOHH_19060 fdnG formate dehydrogenase-N subunit alpha 0.62 3
Escherichia coli ECRC98 0.35 JDDGAC_01180 rnd ribonuclease D 0.62 JDDGAC_17580 fdnG formate dehydrogenase-N subunit alpha low > 86
Escherichia coli ECRC100 0.35 OKFHMN_26605 rnd ribonuclease D 0.62 OKFHMN_01385 fdnG formate dehydrogenase-N subunit alpha low > 80
Escherichia coli ECRC101 0.35 MCAODC_18805 rnd ribonuclease D 0.62 MCAODC_16555 fdnG formate dehydrogenase-N subunit alpha low > 87
Escherichia coli ECRC102 0.35 NIAGMN_01460 rnd ribonuclease D 0.62 NIAGMN_25515 fdnG formate dehydrogenase-N subunit alpha — —
Escherichia coli ECRC62 0.35 BNILDI_15910 rnd ribonuclease D 0.62 BNILDI_17545 fdnG formate dehydrogenase-N subunit alpha low > 75
Escherichia coli Nissle 1917 0.35 ECOLIN_RS10035 ribonuclease D 0.62 ECOLIN_RS22450 formate dehydrogenase-N subunit alpha — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS11270 ribonuclease D 0.61 HER17_RS14665 formate dehydrogenase-N subunit alpha low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2819 Ribonuclease D (EC 3.1.26.3) 0.62 GFF2560 Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing low > 78
Rahnella sp. WP5 0.32 EX31_RS10595 ribonuclease D 0.59 EX31_RS05775 formate dehydrogenase-N subunit alpha low > 89
Enterobacter asburiae PDN3 0.32 EX28DRAFT_0755 ribonuclease D 0.61 EX28DRAFT_1083 formate dehydrogenase (quinone-dependent) catalytic subunit low > 76
Dickeya dadantii 3937 0.32 DDA3937_RS11220 ribonuclease D 0.61 DDA3937_RS07850 formate dehydrogenase-N subunit alpha low > 74
Serratia liquefaciens MT49 0.32 IAI46_14530 ribonuclease D 0.62 IAI46_00210 formate dehydrogenase-N subunit alpha low > 86
Klebsiella michiganensis M5al 0.32 BWI76_RS17795 ribonuclease D 0.59 BWI76_RS19155 formate dehydrogenase-N subunit alpha low > 92
Dickeya dianthicola 67-19 0.32 HGI48_RS11255 ribonuclease D 0.61 HGI48_RS14160 formate dehydrogenase-N subunit alpha low > 71
Dickeya dianthicola ME23 0.32 DZA65_RS11600 ribonuclease D 0.61 DZA65_RS14830 formate dehydrogenase-N subunit alpha low > 75
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_4496 Ribonuclease D (EC 3.1.26.3) 0.56 PfGW456L13_3091 Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing low > 87
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_3345 Ribonuclease D (EC 3.1.26.3) 0.57 Pf1N1B4_4947 Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing low > 87
Pseudomonas stutzeri RCH2 0.27 Psest_2995 ribonuclease D 0.59 Psest_4104 formate dehydrogenase, alpha subunit, proteobacterial-type — —
Pseudomonas putida KT2440 0.26 PP_4591 Ribonuclease D 0.58 PP_0489 formate dehydrogenase-O major subunit low > 96
Azospirillum sp. SherDot2 0.21 MPMX19_00986 Ribonuclease D 0.58 MPMX19_03497 Formate dehydrogenase-O major subunit low > 112
Sinorhizobium meliloti 1021 0.21 SMc00622 ribonuclease D protein 0.52 SMa0002 formate dehydrogenase subunit alpha low > 103
Dyella japonica UNC79MFTsu3.2 0.20 ABZR86_RS07350 ribonuclease D 0.56 ABZR86_RS04505 formate dehydrogenase-N subunit alpha low > 74

Not shown: 37 genomes with orthologs for Shewana3_2385 only; 4 genomes with orthologs for Shewana3_2089 only