Conservation of cofitness between Shew_2455 and Shew_1960 in Shewanella loihica PV-4

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2455 peptidase M23B (RefSeq) 1.0 Shew_1960 hypothetical protein (RefSeq) 0.43 19
Shewanella sp. ANA-3 0.68 Shewana3_2610 peptidase M23B (RefSeq) 0.73 Shewana3_1983 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.68 SO2842 peptidase, M23/M37 family (NCBI ptt file) 0.74 SO2396 conserved hypothetical protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.66 Sama_1269 M24/M37 family peptidase (RefSeq) 0.75 Sama_1742 hypothetical protein (RefSeq) — —
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS02350 murein DD-endopeptidase MepM 0.23 PagCFBP13505_RS01380 DUF2058 domain-containing protein low > 74
Pantoea sp. MT58 0.30 IAI47_08470 murein DD-endopeptidase MepM 0.23 IAI47_07275 DUF2058 domain-containing protein low > 76
Rahnella sp. WP5 0.29 EX31_RS10670 murein DD-endopeptidase MepM 0.23 EX31_RS11070 DUF2058 domain-containing protein low > 89
Serratia liquefaciens MT49 0.28 IAI46_14600 murein DD-endopeptidase MepM 0.25 IAI46_18125 DUF2058 domain-containing protein low > 86
Pectobacterium carotovorum WPP14 0.28 HER17_RS11800 murein DD-endopeptidase MepM 0.24 HER17_RS13805 DUF2058 domain-containing protein low > 75
Escherichia coli ECRC100 0.27 OKFHMN_26310 mepM murein DD-endopeptidase MepM 0.25 OKFHMN_08750 yaiL Uncharacterized protein YaiL low > 79
Escherichia coli Nissle 1917 0.27 ECOLIN_RS10340 murein DD-endopeptidase MepM 0.25 ECOLIN_RS02200 DUF2058 domain-containing protein — —
Escherichia coli ECOR38 0.27 HEPCGN_04715 mepM murein DD-endopeptidase MepM 0.25 HEPCGN_07375 yaiL Uncharacterized protein YaiL low > 88
Escherichia coli ECRC99 0.27 KEDOAH_01795 mepM murein DD-endopeptidase MepM 0.25 KEDOAH_19220 yaiL Uncharacterized protein YaiL — —
Escherichia coli BW25113 0.27 b1856 yebA orf, hypothetical protein (VIMSS) 0.25 b0354 yaiL nucleoprotein/polynucleotide-associated enzyme (VIMSS) low > 76
Escherichia coli BL21 0.27 ECD_01827 murein DD-endopeptidase, space-maker hydrolase, septation protein 0.25 ECD_00308 DUF2058 family protein low > 61
Escherichia coli ECRC101 0.27 MCAODC_19095 mepM murein DD-endopeptidase MepM 0.25 MCAODC_27980 yaiL Uncharacterized protein YaiL low > 88
Escherichia coli ECRC98 0.27 JDDGAC_00885 mepM murein DD-endopeptidase MepM 0.25 JDDGAC_12405 yaiL Uncharacterized protein YaiL low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01872 Murein DD-endopeptidase MepM 0.25 OHPLBJKB_03317 hypothetical protein low > 74
Escherichia fergusonii Becca 0.27 EFB2_02086 Murein DD-endopeptidase MepM 0.25 EFB2_03696 hypothetical protein low > 86
Escherichia coli ECRC62 0.27 BNILDI_15540 mepM murein DD-endopeptidase MepM 0.25 BNILDI_23075 yaiL Uncharacterized protein YaiL low > 75
Escherichia coli ECRC102 0.27 NIAGMN_01750 mepM murein DD-endopeptidase MepM 0.24 NIAGMN_06805 yaiL Uncharacterized protein YaiL low > 80
Escherichia coli ECOR27 0.27 NOLOHH_16750 mepM murein DD-endopeptidase MepM 0.25 NOLOHH_01665 yaiL Uncharacterized protein YaiL low > 76
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0700 Membrane proteins related to metalloendopeptidases 0.24 EX28DRAFT_1360 Uncharacterized protein conserved in bacteria low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF1635 Cell wall endopeptidase, family M23/M37 0.22 GFF1361 Nucleoprotein/polynucleotide-associated enzyme — —
Enterobacter sp. TBS_079 0.26 MPMX20_02761 Murein DD-endopeptidase MepM 0.23 MPMX20_02186 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.26 BWI76_RS18125 murein DD-endopeptidase MepM 0.22 BWI76_RS15455 nucleoprotein/polynucleotide-associated enzyme low > 92
Klebsiella pneumoniae MKP103 0.26 KDGMDA_25390 murein DD-endopeptidase MepM 0.23 KDGMDA_24885 DUF2058 domain-containing protein low > 95

Not shown: 2 genomes with orthologs for Shew_2455 only; 30 genomes with orthologs for Shew_1960 only