Conservation of cofitness between SO3423 and SO2440 in Shewanella oneidensis MR-1

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO3423 holC DNA polymerase III, chi subunit (NCBI ptt file) 1.0 SO2440 thiH thiH protein (NCBI ptt file) 0.42 6
Shewanella sp. ANA-3 0.94 Shewana3_1132 DNA polymerase III chi subunit, HolC (RefSeq) 0.92 Shewana3_1941 thiH thiamine biosynthesis protein ThiH (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_0924 DNA polymerase III chi subunit, HolC (RefSeq) 0.74 Shew_2091 thiH thiamine biosynthesis protein ThiH (RefSeq) — —
Shewanella amazonensis SB2B 0.60 Sama_0791 DNA polymerase III, chi subunit (RefSeq) 0.69 Sama_1855 thiH thiamine biosynthesis protein ThiH (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.39 HER17_RS19455 DNA polymerase III subunit chi 0.51 HER17_RS20405 2-iminoacetate synthase ThiH — —
Dickeya dianthicola ME23 0.38 DZA65_RS02055 DNA polymerase III subunit chi 0.54 DZA65_RS01190 2-iminoacetate synthase ThiH — —
Dickeya dadantii 3937 0.38 DDA3937_RS01990 DNA polymerase III subunit chi 0.54 DDA3937_RS01150 2-iminoacetate synthase ThiH — —
Rahnella sp. WP5 0.36 EX31_RS04390 DNA polymerase III subunit chi 0.51 EX31_RS16790 2-iminoacetate synthase ThiH low > 89
Escherichia coli BW25113 0.35 b4259 holC DNA polymerase III subunit chi (NCBI) 0.55 b3990 thiH thiamine biosynthesis protein ThiH (NCBI) — —
Escherichia coli ECRC102 0.35 NIAGMN_09660 holC DNA polymerase III subunit chi 0.55 NIAGMN_11150 thiH 2-iminoacetate synthase ThiH — —
Dickeya dianthicola 67-19 0.35 HGI48_RS01950 DNA polymerase III subunit chi 0.53 HGI48_RS01145 2-iminoacetate synthase ThiH — —
Escherichia coli ECRC101 0.35 OKFHMN_11810 holC DNA polymerase III subunit chi 0.55 OKFHMN_13400 thiH 2-iminoacetate synthase ThiH — —
Escherichia coli ECRC99 0.35 KEDOAH_16345 holC DNA polymerase III subunit chi 0.55 KEDOAH_14760 thiH 2-iminoacetate synthase ThiH — —
Escherichia coli ECRC98 0.35 JDDGAC_15450 holC DNA polymerase III subunit chi 0.55 JDDGAC_17025 thiH 2-iminoacetate synthase ThiH — —
Escherichia coli ECRC101 0.35 MCAODC_02315 holC DNA polymerase III subunit chi 0.55 MCAODC_03900 thiH 2-iminoacetate synthase ThiH — —
Escherichia coli BL21 0.35 ECD_04125 DNA polymerase III, chi subunit 0.55 ECD_03866 tyrosine lyase, involved in thiamine-thiazole moiety synthesis — —
Enterobacter asburiae PDN3 0.35 EX28DRAFT_3268 DNA polymerase III, chi subunit (EC 2.7.7.7) 0.54 EX28DRAFT_4531 thiazole biosynthesis protein ThiH — —
Escherichia coli ECOR38 0.35 HEPCGN_10000 holC DNA polymerase III subunit chi 0.55 HEPCGN_12035 thiH 2-iminoacetate synthase ThiH — —
Escherichia fergusonii Becca 0.35 EFB2_04276 DNA polymerase III subunit chi 0.55 EFB2_04622 2-iminoacetate synthase low > 86
Enterobacter sp. TBS_079 0.35 MPMX20_04119 DNA polymerase III subunit chi 0.54 MPMX20_00212 2-iminoacetate synthase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_03777 DNA polymerase III subunit chi 0.55 OHPLBJKB_04061 2-iminoacetate synthase low > 73
Escherichia coli Nissle 1917 0.35 ECOLIN_RS24690 DNA polymerase III subunit chi 0.55 ECOLIN_RS23015 2-iminoacetate synthase ThiH low > 52
Escherichia coli ECOR27 0.35 NOLOHH_04065 holC DNA polymerase III subunit chi 0.55 NOLOHH_05545 thiH 2-iminoacetate synthase ThiH low > 57
Escherichia coli ECRC62 0.35 BNILDI_07450 holC DNA polymerase III subunit chi 0.55 BNILDI_05980 thiH 2-iminoacetate synthase ThiH — —
Erwinia tracheiphila SCR3 0.34 LU632_RS20860 DNA polymerase III subunit chi 0.52 LU632_RS00945 thiH 2-iminoacetate synthase ThiH — —
Klebsiella michiganensis M5al 0.34 BWI76_RS03035 DNA polymerase III subunit chi 0.54 BWI76_RS01530 2-iminoacetate synthase ThiH — —
Serratia liquefaciens MT49 0.34 IAI46_02355 DNA polymerase III subunit chi 0.52 IAI46_01295 2-iminoacetate synthase ThiH — —
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_12685 DNA polymerase III subunit chi 0.61 CSW01_00360 2-iminoacetate synthase ThiH low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF948 DNA polymerase III chi subunit (EC 2.7.7.7) 0.54 GFF4203 Thiazole biosynthesis protein ThiH low > 78
Alteromonas macleodii MIT1002 0.28 MIT1002_03196 DNA polymerase III subunit chi 0.52 MIT1002_00092 2-iminoacetate synthase — —

Not shown: 28 genomes with orthologs for SO3423 only; 11 genomes with orthologs for SO2440 only