Conservation of cofitness between b3355 and b3993 in Escherichia coli BW25113

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3355 prkB predicted phosphoribulokinase (NCBI) 1.0 b3993 thiE thiamine-phosphate pyrophosphorylase (NCBI) 0.41 2
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00347 Phosphoribulokinase, plasmid 0.99 OHPLBJKB_04057 Thiamine-phosphate synthase low > 73
Escherichia coli ECRC62 1.00 BNILDI_02470 prkB phosphoribulokinase 1.00 BNILDI_06000 thiE thiamine phosphate synthase — —
Escherichia coli BL21 1.00 ECD_03206 putative phosphoribulokinase 1.00 ECD_03870 thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) low > 60
Escherichia fergusonii Becca 1.00 EFB2_00467 Phosphoribulokinase, plasmid 0.99 EFB2_04618 Thiamine-phosphate synthase low > 86
Escherichia coli ECOR38 1.00 HEPCGN_16075 prkB phosphoribulokinase 0.96 HEPCGN_12015 thiE thiamine phosphate synthase low > 85
Escherichia coli ECRC102 1.00 NIAGMN_15020 prkB phosphoribulokinase 0.99 NIAGMN_11130 thiE thiamine phosphate synthase — —
Escherichia coli ECRC98 1.00 JDDGAC_20880 prkB phosphoribulokinase 0.99 JDDGAC_17005 thiE thiamine phosphate synthase — —
Escherichia coli ECRC101 1.00 OKFHMN_17250 prkB phosphoribulokinase 0.99 OKFHMN_13380 thiE thiamine phosphate synthase — —
Escherichia coli ECOR27 1.00 NOLOHH_09050 prkB phosphoribulokinase 1.00 NOLOHH_05525 thiE thiamine phosphate synthase low > 57
Escherichia coli ECRC99 1.00 KEDOAH_10890 prkB phosphoribulokinase 0.99 KEDOAH_14780 thiE thiamine phosphate synthase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS19215 phosphoribulokinase 0.98 ECOLIN_RS23035 thiamine phosphate synthase low > 52
Escherichia coli ECRC101 1.00 MCAODC_07780 prkB phosphoribulokinase 0.99 MCAODC_03880 thiE thiamine phosphate synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.98 GFF3714 Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown 0.92 GFF4199 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS25975 phosphoribulokinase 0.91 BWI76_RS01550 thiamine phosphate synthase low > 92
Enterobacter asburiae PDN3 0.94 EX28DRAFT_4174 Phosphoribulokinase 0.90 EX28DRAFT_4535 thiamine-phosphate diphosphorylase low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_04258 Phosphoribulokinase, plasmid 0.89 MPMX20_00216 Thiamine-phosphate synthase low > 85
Pantoea sp. MT58 0.91 IAI47_01975 phosphoribulokinase 0.69 IAI47_18090 thiamine phosphate synthase low > 76
Serratia liquefaciens MT49 0.90 IAI46_23570 phosphoribulokinase 0.72 IAI46_01315 thiamine phosphate synthase low > 86
Erwinia tracheiphila SCR3 0.90 LU632_RS22790 phosphoribulokinase 0.70 LU632_RS00965 thiE thiamine phosphate synthase low > 74
Pectobacterium carotovorum WPP14 0.89 HER17_RS01925 phosphoribulokinase 0.71 HER17_RS20385 thiamine phosphate synthase low > 75
Rahnella sp. WP5 0.88 EX31_RS04610 phosphoribulokinase 0.71 EX31_RS16810 thiamine phosphate synthase low > 89
Dickeya dianthicola 67-19 0.88 HGI48_RS19555 phosphoribulokinase 0.68 HGI48_RS01165 thiamine phosphate synthase low > 71
Dickeya dadantii 3937 0.87 DDA3937_RS19435 phosphoribulokinase 0.69 DDA3937_RS01170 thiamine phosphate synthase low > 74
Dickeya dianthicola ME23 0.87 DZA65_RS20640 phosphoribulokinase 0.66 DZA65_RS01210 thiamine phosphate synthase low > 75
Rhodopseudomonas palustris CGA009 0.57 TX73_024115 phosphoribulokinase 0.41 TX73_018535 thiamine phosphate synthase — —
Dechlorosoma suillum PS 0.56 Dsui_1562 phosphoribulokinase 0.17 Dsui_0663 thiamine-phosphate pyrophosphorylase — —
Magnetospirillum magneticum AMB-1 0.56 AMB_RS13555 phosphoribulokinase 0.15 AMB_RS14385 thiamine phosphate synthase — —
Marinobacter adhaerens HP15 0.54 HP15_3311 phosphoribulokinase 0.13 HP15_348 thiamine-phosphate pyrophosphorylase — —
Sinorhizobium meliloti 1021 0.53 SM_b20201 phosphoribulokinase 0.40 SM_b20618 thiamine-phosphate pyrophosphorylase low > 103

Not shown: 13 genomes with orthologs for b3355 only; 41 genomes with orthologs for b3993 only