Conservation of cofitness between b4039 and b2729 in Escherichia coli BW25113

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4039 ubiC chorismate lyase (VIMSS) 1.0 b2729 hypD protein required for maturation of hydrogenases (NCBI) 0.28 5
Escherichia coli ECRC102 0.99 NIAGMN_10835 ubiC chorismate lyase 0.99 NIAGMN_18320 hypD hydrogenase formation protein HypD — —
Escherichia coli ECRC98 0.99 JDDGAC_16710 ubiC chorismate lyase 1.00 JDDGAC_24215 hypD hydrogenase formation protein HypD — —
Escherichia coli ECRC99 0.99 KEDOAH_15075 ubiC chorismate lyase 1.00 KEDOAH_07585 hypD hydrogenase formation protein HypD — —
Escherichia coli ECRC101 0.99 OKFHMN_13085 ubiC chorismate lyase 0.99 OKFHMN_20550 hypD hydrogenase formation protein HypD — —
Escherichia coli ECRC101 0.99 MCAODC_03585 ubiC chorismate lyase 1.00 MCAODC_11075 hypD hydrogenase formation protein HypD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04004 Chorismate pyruvate-lyase 1.00 OHPLBJKB_01005 Hydrogenase maturation factor HypD low > 73
Escherichia coli ECOR38 0.99 HEPCGN_11605 ubiC chorismate lyase 1.00 HEPCGN_19740 hypD hydrogenase formation protein HypD low > 85
Escherichia coli BL21 0.99 ECD_03911 chorismate--pyruvate lyase 1.00 ECD_02579 hydrogenase maturation protein low > 60
Escherichia coli ECOR27 0.99 NOLOHH_05240 ubiC chorismate lyase 1.00 NOLOHH_12395 hypD hydrogenase formation protein HypD low > 57
Escherichia coli ECRC62 0.98 BNILDI_06280 ubiC chorismate lyase 1.00 BNILDI_10945 hypD hydrogenase formation protein HypD — —
Escherichia coli Nissle 1917 0.98 ECOLIN_RS23315 chorismate lyase 1.00 ECOLIN_RS15250 hydrogenase formation protein HypD low > 52
Escherichia fergusonii Becca 0.98 EFB2_04564 Chorismate pyruvate-lyase 0.99 EFB2_01194 Hydrogenase maturation factor HypD low > 86
Enterobacter asburiae PDN3 0.88 EX28DRAFT_4305 chorismate lyase (EC 4.1.3.40) 0.88 EX28DRAFT_2820 hydrogenase expression/formation protein HypD — —
Enterobacter sp. TBS_079 0.87 MPMX20_00255 Chorismate pyruvate-lyase 0.88 MPMX20_03614 Hydrogenase maturation factor HypD low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF1408 Chorismate--pyruvate lyase (EC 4.1.3.40) 0.95 GFF4723 [NiFe] hydrogenase metallocenter assembly protein HypD low > 78
Klebsiella michiganensis M5al 0.80 BWI76_RS01855 chorismate lyase 0.88 BWI76_RS22360 hydrogenase formation protein HypD low > 92
Rahnella sp. WP5 0.49 EX31_RS11825 chorismate lyase 0.73 EX31_RS19880 hydrogenase formation protein HypD low > 89
Dickeya dianthicola ME23 0.47 DZA65_RS02870 chorismate lyase 0.67 DZA65_RS14860 hydrogenase formation protein HypD low > 75
Dickeya dianthicola 67-19 0.46 HGI48_RS02715 chorismate lyase 0.66 HGI48_RS14185 hydrogenase formation protein HypD low > 71
Dickeya dadantii 3937 0.46 DDA3937_RS02740 chorismate lyase 0.67 DDA3937_RS14210 hydrogenase formation protein HypD low > 74
Shewanella loihica PV-4 0.25 Shew_3743 chorismate lyase (RefSeq) 0.43 Shew_1757 hydrogenase expression/formation protein HypD (RefSeq) low > 60
Shewanella amazonensis SB2B 0.23 Sama_3623 putative chorismate--pyruvate lyase (RefSeq) 0.43 Sama_1671 hydrogenase expression/formation protein HypD (RefSeq) low > 62
Shewanella oneidensis MR-1 0.23 SO0131 hypothetical chorismate pyruvate lyase (NCBI ptt file) 0.43 SO2091 hypD hydrogenase expression/formation protein HypD (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.23 Shewana3_0125 chorismate lyase (RefSeq) 0.43 Shewana3_1869 hydrogenase expression/formation protein HypD (RefSeq) low > 73
Dechlorosoma suillum PS 0.18 Dsui_3290 4-hydroxybenzoate synthetase (chorismate lyase) 0.45 Dsui_1159 hydrogenase expression/formation protein HypD low > 51

Not shown: 16 genomes with orthologs for b4039 only; 14 genomes with orthologs for b2729 only