Conservation of cofitness between b3164 and b2576 in Escherichia coli BW25113

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) 1.0 b2576 srmB ATP-dependent RNA helicase (NCBI) 0.46 3
Escherichia coli BL21 1.00 ECD_03031 polynucleotide phosphorylase/polyadenylase 1.00 ECD_02470 ATP-dependent RNA helicase 0.57 33
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase 1.00 OHPLBJKB_01131 ATP-dependent RNA helicase SrmB 0.59 30
Escherichia coli ECRC98 1.00 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase 1.00 JDDGAC_25025 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECOR38 1.00 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase 1.00 HEPCGN_20505 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC102 1.00 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase 1.00 NIAGMN_19130 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC101 1.00 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase 1.00 MCAODC_11890 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC101 1.00 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase 1.00 OKFHMN_21360 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase 1.00 ECOLIN_RS14580 ATP-dependent RNA helicase SrmB 0.86 10
Escherichia coli ECRC99 1.00 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase 1.00 KEDOAH_06860 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC62 1.00 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase 1.00 BNILDI_11835 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECOR27 1.00 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase 1.00 NOLOHH_13035 srmB ATP-dependent RNA helicase SrmB 0.67 32
Escherichia fergusonii Becca 1.00 EFB2_00659 Polyribonucleotide nucleotidyltransferase 1.00 EFB2_01320 ATP-dependent RNA helicase SrmB low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.86 GFF2104 ATP-dependent RNA helicase SrmB low > 78
Enterobacter sp. TBS_079 0.95 MPMX20_04068 Polyribonucleotide nucleotidyltransferase 0.84 MPMX20_03447 ATP-dependent RNA helicase SrmB — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase 0.83 EX28DRAFT_0069 Superfamily II DNA and RNA helicases — —
Klebsiella michiganensis M5al 0.94 BWI76_RS25065 polyribonucleotide nucleotidyltransferase 0.86 BWI76_RS21370 ATP-dependent RNA helicase SrmB 0.26 78
Erwinia tracheiphila SCR3 0.91 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase 0.83 LU632_RS15440 srmB ATP-dependent RNA helicase SrmB — —
Pantoea sp. MT58 0.90 IAI47_17005 polyribonucleotide nucleotidyltransferase 0.86 IAI47_04835 ATP-dependent RNA helicase SrmB low > 76
Dickeya dadantii 3937 0.89 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase 0.79 DDA3937_RS15780 ATP-dependent RNA helicase SrmB low > 74
Serratia liquefaciens MT49 0.89 IAI46_01955 polyribonucleotide nucleotidyltransferase 0.84 IAI46_19600 ATP-dependent RNA helicase SrmB low > 86
Rahnella sp. WP5 0.89 EX31_RS08520 polyribonucleotide nucleotidyltransferase 0.82 EX31_RS21785 ATP-dependent RNA helicase SrmB low > 89
Dickeya dianthicola ME23 0.89 DZA65_RS03255 polyribonucleotide nucleotidyltransferase 0.80 DZA65_RS16945 ATP-dependent RNA helicase SrmB low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS03260 polyribonucleotide nucleotidyltransferase 0.80 HGI48_RS15865 ATP-dependent RNA helicase SrmB low > 71
Pectobacterium carotovorum WPP14 0.88 HER17_RS18190 polyribonucleotide nucleotidyltransferase 0.82 HER17_RS05765 ATP-dependent RNA helicase SrmB — —
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_03410 polyribonucleotide nucleotidyltransferase 0.55 CSW01_03475 ATP-dependent RNA helicase SrmB low > 62
Shewanella loihica PV-4 0.73 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.49 Shew_0767 ATP-dependent RNA helicase SrmB (RefSeq) — —
Shewanella sp. ANA-3 0.72 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.48 Shewana3_3336 ATP-dependent RNA helicase SrmB (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.48 SO0947 srmB ATP-dependent RNA helicase SrmB (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.71 MIT1002_01888 Polyribonucleotide nucleotidyltransferase 0.53 MIT1002_00941 ATP-dependent RNA helicase SrmB — —
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_0104 polyribonucleotide nucleotidyltransferase 0.32 B158DRAFT_1312 Superfamily II DNA and RNA helicases — —
Pseudomonas putida KT2440 0.62 PP_4708 Polyribonucleotide nucleotidyltransferase 0.32 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis — —

Not shown: 70 genomes with orthologs for b3164 only; 0 genomes with orthologs for b2576 only