Conservation of cofitness between b2498 and b2576 in Escherichia coli BW25113

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2498 upp uracil phosphoribosyltransferase (VIMSS) 1.0 b2576 srmB ATP-dependent RNA helicase (NCBI) 0.25 8
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01228 Uracil phosphoribosyltransferase 1.00 OHPLBJKB_01131 ATP-dependent RNA helicase SrmB 0.78 8
Escherichia coli BL21 1.00 ECD_02390 uracil phosphoribosyltransferase 1.00 ECD_02470 ATP-dependent RNA helicase low > 60
Escherichia coli ECRC62 1.00 BNILDI_12275 upp uracil phosphoribosyltransferase 1.00 BNILDI_11835 srmB ATP-dependent RNA helicase SrmB — —
Escherichia fergusonii Becca 1.00 EFB2_01400 Uracil phosphoribosyltransferase 1.00 EFB2_01320 ATP-dependent RNA helicase SrmB low > 86
Escherichia coli ECOR38 1.00 HEPCGN_20980 upp uracil phosphoribosyltransferase 1.00 HEPCGN_20505 srmB ATP-dependent RNA helicase SrmB low > 85
Escherichia coli ECRC101 1.00 MCAODC_12345 upp uracil phosphoribosyltransferase 1.00 MCAODC_11890 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECOR27 1.00 NOLOHH_13465 upp uracil phosphoribosyltransferase 1.00 NOLOHH_13035 srmB ATP-dependent RNA helicase SrmB low > 57
Escherichia coli ECRC101 1.00 OKFHMN_21815 upp uracil phosphoribosyltransferase 1.00 OKFHMN_21360 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC99 1.00 KEDOAH_06405 upp uracil phosphoribosyltransferase 1.00 KEDOAH_06860 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14185 uracil phosphoribosyltransferase 1.00 ECOLIN_RS14580 ATP-dependent RNA helicase SrmB 0.68 46
Escherichia coli ECRC98 1.00 JDDGAC_25760 upp uracil phosphoribosyltransferase 1.00 JDDGAC_25025 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC102 1.00 NIAGMN_19585 upp uracil phosphoribosyltransferase 1.00 NIAGMN_19130 srmB ATP-dependent RNA helicase SrmB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.99 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.86 GFF2104 ATP-dependent RNA helicase SrmB low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS20945 uracil phosphoribosyltransferase 0.86 BWI76_RS21370 ATP-dependent RNA helicase SrmB low > 92
Enterobacter asburiae PDN3 0.96 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) 0.83 EX28DRAFT_0069 Superfamily II DNA and RNA helicases low > 76
Enterobacter sp. TBS_079 0.96 MPMX20_03352 Uracil phosphoribosyltransferase 0.84 MPMX20_03447 ATP-dependent RNA helicase SrmB low > 85
Dickeya dianthicola 67-19 0.95 HGI48_RS06075 uracil phosphoribosyltransferase 0.80 HGI48_RS15865 ATP-dependent RNA helicase SrmB low > 71
Dickeya dadantii 3937 0.95 DDA3937_RS06030 uracil phosphoribosyltransferase 0.79 DDA3937_RS15780 ATP-dependent RNA helicase SrmB low > 74
Dickeya dianthicola ME23 0.95 DZA65_RS06425 uracil phosphoribosyltransferase 0.80 DZA65_RS16945 ATP-dependent RNA helicase SrmB low > 75
Pantoea sp. MT58 0.95 IAI47_05185 uracil phosphoribosyltransferase 0.86 IAI47_04835 ATP-dependent RNA helicase SrmB low > 76
Pectobacterium carotovorum WPP14 0.94 HER17_RS15460 uracil phosphoribosyltransferase 0.82 HER17_RS05765 ATP-dependent RNA helicase SrmB low > 75
Serratia liquefaciens MT49 0.94 IAI46_18880 uracil phosphoribosyltransferase 0.84 IAI46_19600 ATP-dependent RNA helicase SrmB low > 86
Rahnella sp. WP5 0.94 EX31_RS22700 uracil phosphoribosyltransferase 0.82 EX31_RS21785 ATP-dependent RNA helicase SrmB low > 89
Erwinia tracheiphila SCR3 0.93 LU632_RS08280 upp uracil phosphoribosyltransferase 0.83 LU632_RS15440 srmB ATP-dependent RNA helicase SrmB low > 74
Shewanella loihica PV-4 0.89 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) 0.49 Shew_0767 ATP-dependent RNA helicase SrmB (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.89 CSW01_11345 uracil phosphoribosyltransferase 0.55 CSW01_03475 ATP-dependent RNA helicase SrmB low > 62
Shewanella sp. ANA-3 0.88 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) 0.48 Shewana3_3336 ATP-dependent RNA helicase SrmB (RefSeq) low > 73
Shewanella oneidensis MR-1 0.88 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) 0.48 SO0947 srmB ATP-dependent RNA helicase SrmB (NCBI ptt file) low > 76
Pseudomonas putida KT2440 0.73 PP_0746 Uracil phosphoribosyltransferase 0.32 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis 0.16 29
Alteromonas macleodii MIT1002 0.72 MIT1002_02893 Uracil phosphoribosyltransferase 0.53 MIT1002_00941 ATP-dependent RNA helicase SrmB — —

Not shown: 68 genomes with orthologs for b2498 only; 1 genomes with orthologs for b2576 only