Conservation of cofitness between b0237 and b1634 in Escherichia coli BW25113

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0237 pepD aminoacyl-histidine dipeptidase (peptidase D) (NCBI) 1.0 b1634 tppB putative tripeptide transporter permease (NCBI) 0.32 10
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03403 Cytosol non-specific dipeptidase 1.00 OHPLBJKB_02091 Dipeptide and tripeptide permease A low > 73
Escherichia coli ECRC62 1.00 BNILDI_00270 pepD cytosol nonspecific dipeptidase 1.00 BNILDI_16825 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli ECOR27 1.00 NOLOHH_02075 pepD cytosol nonspecific dipeptidase 1.00 NOLOHH_18035 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli ECRC101 0.99 MCAODC_00220 pepD cytosol nonspecific dipeptidase 0.99 MCAODC_17895 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli ECRC102 0.99 NIAGMN_07560 pepD cytosol nonspecific dipeptidase 1.00 NIAGMN_00550 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli ECRC99 0.99 KEDOAH_18455 pepD cytosol nonspecific dipeptidase 1.00 KEDOAH_00590 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli ECRC98 0.99 JDDGAC_13325 pepD cytosol nonspecific dipeptidase 1.00 JDDGAC_02105 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli ECOR38 0.99 HEPCGN_07805 pepD cytosol nonspecific dipeptidase 1.00 HEPCGN_05900 dtpA dipeptide/tripeptide permease DtpA low > 85
Escherichia coli ECRC101 0.99 OKFHMN_09700 pepD cytosol nonspecific dipeptidase 1.00 OKFHMN_27515 dtpA dipeptide/tripeptide permease DtpA — —
Escherichia coli BL21 0.99 ECD_00232 aminoacyl-histidine dipeptidase (peptidase D) 1.00 ECD_01604 dipeptide and tripeptide permease A low > 60
Escherichia fergusonii Becca 0.99 EFB2_03783 Cytosol non-specific dipeptidase 1.00 EFB2_02358 Dipeptide and tripeptide permease A low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS01800 cytosol nonspecific dipeptidase 1.00 ECOLIN_RS09120 dipeptide/tripeptide permease DtpA — —
Klebsiella michiganensis M5al 0.93 BWI76_RS05540 cytosol nonspecific dipeptidase 0.92 BWI76_RS16390 dipeptide/tripeptide permease A 0.29 7
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF4108 Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) 0.93 GFF3640 Di/tripeptide permease DtpA low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2656 Xaa-His dipeptidase 0.87 EX28DRAFT_1630 amino acid/peptide transporter (Peptide:H+ symporter), bacterial 0.56 31
Enterobacter sp. TBS_079 0.88 MPMX20_00922 Cytosol non-specific dipeptidase 0.88 MPMX20_02004 Dipeptide and tripeptide permease A low > 85
Pantoea sp. MT58 0.80 IAI47_15145 beta-Ala-His dipeptidase 0.79 IAI47_10500 dipeptide/tripeptide permease DtpA 0.35 26
Serratia liquefaciens MT49 0.78 IAI46_04410 beta-Ala-His dipeptidase 0.76 IAI46_11450 dipeptide/tripeptide permease DtpA low > 86
Pectobacterium carotovorum WPP14 0.78 HER17_RS04675 beta-Ala-His dipeptidase 0.78 HER17_RS10865 dipeptide/tripeptide permease DtpA low > 75
Rahnella sp. WP5 0.75 EX31_RS21000 beta-Ala-His dipeptidase 0.77 EX31_RS15730 dipeptide/tripeptide permease DtpA low > 89
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_11600 aminoacyl-histidine dipeptidase 0.56 CSW01_05045 dipeptide/tripeptide permease DtpA low > 62
Shewanella loihica PV-4 0.61 Shew_2852 aminoacyl-histidine dipeptidase (RefSeq) 0.21 Shew_1397 amino acid/peptide transporter (RefSeq) low > 60
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS09110 aminoacyl-histidine dipeptidase 0.19 HMPREF1181_RS06265 peptide MFS transporter low > 56
Parabacteroides merdae CL09T00C40 0.46 HMPREF1078_RS04870 aminoacyl-histidine dipeptidase 0.14 HMPREF1078_RS15310 peptide MFS transporter low > 61
Bacteroides thetaiotaomicron VPI-5482 0.46 BT1615 aminoacyl-histidine dipeptidase (NCBI ptt file) 0.19 BT4385 di-tripeptide ABC transporter (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.46 BACOVA_04354 Xaa-His dipeptidase 0.18 BACOVA_05220 amino acid/peptide transporter low > 94

Not shown: 12 genomes with orthologs for b0237 only; 11 genomes with orthologs for b1634 only