Conservation of cofitness between b0060 and b1184 in Escherichia coli BW25113

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0060 polB DNA polymerase II (NCBI) 1.0 b1184 umuC DNA polymerase V subunit UmuC (NCBI) 0.61 1
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03598 DNA polymerase II 1.00 OHPLBJKB_02505 Protein UmuC low > 73
Escherichia coli BL21 1.00 ECD_00062 DNA polymerase II 1.00 ECD_01159 translesion error-prone DNA polymerase V subunit; DNA polymerase activity — —
Escherichia coli ECOR27 0.99 NOLOHH_03140 polB DNA polymerase II 1.00 NOLOHH_20750 umuC DNA polymerase V catalytic protein — —
Escherichia coli ECRC62 0.99 BNILDI_08465 polB DNA polymerase II 0.99 BNILDI_18915 umuC DNA polymerase V catalytic protein — —
Escherichia coli ECRC98 0.99 JDDGAC_14390 polB DNA polymerase II 0.99 JDDGAC_06245 umuC DNA polymerase V catalytic protein — —
Escherichia coli ECRC99 0.99 KEDOAH_17360 polB DNA polymerase II 0.99 KEDOAH_25280 umuC DNA polymerase V catalytic protein — —
Escherichia coli ECRC101 0.99 OKFHMN_10795 polB DNA polymerase II 0.99 OKFHMN_28265 umuC DNA polymerase V catalytic protein — —
Escherichia coli ECRC101 0.99 MCAODC_01310 polB DNA polymerase II 0.99 MCAODC_21905 umuC DNA polymerase V catalytic protein — —
Escherichia coli ECRC102 0.99 NIAGMN_08645 polB DNA polymerase II 0.99 NIAGMN_27955 umuC DNA polymerase V catalytic protein — —
Escherichia coli ECOR38 0.99 HEPCGN_08785 polB DNA polymerase II 0.99 HEPCGN_24725 umuC DNA polymerase V catalytic protein low > 85
Escherichia fergusonii Becca 0.98 EFB2_03985 DNA polymerase II 0.98 EFB2_02748 Protein UmuC low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS00320 DNA polymerase II 0.98 ECOLIN_RS07160 DNA polymerase V catalytic protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF182 DNA polymerase II (EC 2.7.7.7) 0.85 GFF3989 Error-prone, lesion bypass DNA polymerase V (UmuC) low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_00754 DNA polymerase II 0.66 MPMX20_02045 Protein UmuC low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.87 EX28DRAFT_1261 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS04575 DNA polymerase II 0.87 BWI76_RS12385 DNA polymerase V subunit UmuC low > 92
Pantoea sp. MT58 0.77 IAI47_16050 DNA polymerase II 0.64 IAI47_10585 translesion error-prone DNA polymerase V subunit UmuC low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02810 polB DNA polymerase II 0.56 LU632_RS01730 umuC translesion error-prone DNA polymerase V subunit UmuC low > 74
Rahnella sp. WP5 0.70 EX31_RS03740 DNA polymerase II 0.68 EX31_RS00805 translesion error-prone DNA polymerase V subunit UmuC low > 89
Serratia liquefaciens MT49 0.70 IAI46_03280 DNA polymerase II 0.65 IAI46_15980 translesion error-prone DNA polymerase V subunit UmuC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.46 Psyr_1425 DNA-directed DNA polymerase low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.46 Psyr_1425 DNA-directed DNA polymerase low > 86
Pseudomonas sp. RS175 0.67 PFR28_01299 DNA polymerase II 0.44 PFR28_01192 Protein UmuC low > 88
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.35 Pf1N1B4_5450 Error-prone, lesion bypass DNA polymerase V (UmuC) low > 87
Pseudomonas sp. S08-1 0.66 OH686_16850 DNA polymerase II 0.39 OH686_22885 Error-prone, lesion bypass DNA polymerase V (UmuC) low > 80
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.36 SOA0012 umuC umuC protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.37 Shewana3_2629 DNA polymerase II (RefSeq) 0.36 Shewana3_1832 DNA-repair protein (RefSeq) low > 73

Not shown: 24 genomes with orthologs for b0060 only; 10 genomes with orthologs for b1184 only