| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3715 | | ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal | 1.0 | Psyr_3607 | | transcriptional regulator, LysR family | 0.37 | 19 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3715 | | ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal | 1.00 | Psyr_3607 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.77 | AO353_02830 | | histidine kinase | 0.84 | AO353_22295 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.75 | Pf1N1B4_3479 | | Sensor histidine kinase | 0.84 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.75 | PfGW456L13_2008 | | Sensor histidine kinase | 0.84 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | low | > 87 |
| Pseudomonas sp. DMC3 | 0.74 | GFF4844 | | Adaptive-response sensory-kinase SasA | 0.83 | GFF943 | | HTH-type transcriptional regulator DmlR | low | > 89 |
| Pseudomonas lactucae CFBP13502 | 0.73 | GEMAOFIL_04450 | | Adaptive-response sensory-kinase SasA | 0.79 | GEMAOFIL_02593 | | HTH-type transcriptional regulator DmlR | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.73 | AO356_18945 | | histidine kinase | 0.76 | AO356_21990 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas orientalis W4I3 | 0.73 | QF045_RS23620 | | ATP-binding protein | 0.79 | QF045_RS13895 | | LysR family transcriptional regulator | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.72 | PFLU_RS23145 | | HAMP domain-containing protein | 0.80 | PFLU_RS18050 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.72 | PFLU_RS23145 | | HAMP domain-containing protein | 0.80 | PFLU_RS18050 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.72 | Pf6N2E2_5700 | | Sensor histidine kinase | 0.77 | Pf6N2E2_259 | | Transcriptional regulator, LysR family | low | > 103 |
| Pseudomonas simiae WCS417 | 0.72 | PS417_21530 | | histidine kinase | 0.79 | PS417_16085 | | LysR family transcriptional regulator | low | > 88 |
| Pseudomonas sp. RS175 | 0.71 | PFR28_03248 | | Adaptive-response sensory-kinase SasA | 0.76 | PFR28_02643 | | HTH-type transcriptional regulator DmlR | low | > 88 |
| Pseudomonas sp. BP01 | 0.67 | JOY50_RS01995 | | ATP-binding protein | 0.70 | JOY50_RS04745 | | LysR family transcriptional regulator | low | > 84 |
| Pseudomonas putida KT2440 | 0.67 | PP_1182 | | Sensor histidine kinase | 0.71 | PP_3811 | | Transcriptional regulator, LysR family | low | > 96 |
| Pseudomonas segetis P6 | 0.65 | ACVTMO_RS15925 | | ATP-binding protein | 0.35 | ACVTMO_RS22150 | | LysR family transcriptional regulator | low | > 75 |
| Pseudomonas aeruginosa MRSN321 | 0.63 | DY961_RS06630 | | ATP-binding protein | 0.32 | DY961_RS01230 | | LysR family transcriptional regulator | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.63 | DQ20_RS46170 | | ATP-binding protein | 0.32 | DQ20_RS39125 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.62 | IKLFDK_05360 | | two-component sensor histidine kinase | 0.32 | IKLFDK_15970 | | LysR family transcriptional regulator | low | > 98 |
Not shown: 5 genomes with orthologs for Psyr_3715 only; 23 genomes with orthologs for Psyr_3607 only