| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0039 | | luciferase | 1.0 | Psyr_0693 | | Binding-protein-dependent transport systems inner membrane component | 0.34 | 18 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0039 | | luciferase | 1.00 | Psyr_0693 | | Binding-protein-dependent transport systems inner membrane component | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.90 | COO64_RS02300 | | LLM class flavin-dependent oxidoreductase | 0.75 | COO64_RS03775 | | ABC transporter permease | low | > 93 |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_4053 | | Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases | 0.67 | Pf6N2E2_1611 | | Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_1836 | | Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases | 0.63 | Pf1N1B4_4320 | | Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) | low | > 87 |
| Pseudomonas sp. DMC3 | 0.86 | GFF671 | | hypothetical protein | 0.68 | GFF2980 | | Phosphate-import permease protein PhnE | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.86 | AO356_10940 | | hypothetical protein | 0.66 | AO356_23395 | | ABC transporter permease | low | > 104 |
| Pseudomonas sp. BP01 | 0.85 | JOY50_RS21285 | | LLM class flavin-dependent oxidoreductase | 0.63 | JOY50_RS22900 | | ABC transporter permease | low | > 84 |
| Pseudomonas putida KT2440 | 0.84 | PP_0088 | | putative alkanal monooxygenase | 0.63 | PP_0826 | | phosphonate ABC transporter, permease protein | low | > 96 |
| Pseudomonas segetis P6 | 0.79 | MPMX49_00369 | | Limonene 1,2-monooxygenase | 0.67 | MPMX49_03299 | | Phosphate-import permease protein PhnE | 0.41 | 46 |
| Pseudomonas stutzeri RCH2 | 0.75 | Psest_0077 | | luciferase family oxidoreductase, group 1 | 0.67 | Psest_1318 | | ABC-type phosphate/phosphonate transport system, permease component | low | > 67 |
| Pseudomonas aeruginosa PUPa3 | 0.72 | DQ20_RS55365 | | LLM class flavin-dependent oxidoreductase | 0.58 | DQ20_RS40725 | | ABC transporter permease | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.72 | DY961_RS05240 | | LLM class flavin-dependent oxidoreductase | 0.58 | DY961_RS00290 | | ABC transporter permease | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.72 | IKLFDK_12195 | | LLM class flavin-dependent oxidoreductase | 0.59 | IKLFDK_17000 | | ABC transporter permease | low | > 98 |
| Pseudomonas sp. S08-1 | 0.71 | OH686_12400 | | Luciferase-like monooxygenase YhbW | 0.74 | OH686_21195 | | ABC transporter, permease protein (cluster 12, methionine/phosphonates) | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS21685 | | hypothetical protein | 0.47 | RR42_RS10100 | | ABC transporter permease | low | > 128 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS04410 | | LLM class flavin-dependent oxidoreductase | 0.49 | ABID97_RS08100 | | ABC transporter permease | low | > 91 |
| Variovorax sp. SCN45 | 0.53 | GFF4914 | | Luciferase-like monooxygenase YhbW | 0.52 | GFF5646 | | ABC transporter, permease protein (cluster 12, methionine/phosphonates) / ABC transporter, permease protein (cluster 12, methionine/phosphonates) | low | > 127 |
Not shown: 81 genomes with orthologs for Psyr_0039 only; 0 genomes with orthologs for Psyr_0693 only