Conservation of cofitness between PfGW456L13_2485 and PfGW456L13_3348 in Pseudomonas fluorescens GW456-L13

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens GW456-L13 1.0 PfGW456L13_2485 Putative protease 1.0 PfGW456L13_3348 Transcriptional regulator 0.40 7
Pseudomonas fluorescens FW300-N1B4 0.95 Pf1N1B4_3925 Putative protease 0.91 Pf1N1B4_4588 Transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_19800 protease 0.88 AO353_23450 LysR family transcriptional regulator low > 101
Pseudomonas sp. RS175 0.93 PFR28_02843 hypothetical protein 0.42 PFR28_01616 HTH-type transcriptional regulator YofA low > 88
Pseudomonas fluorescens SBW25 0.88 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ 0.42 PFLU_RS15500 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ 0.42 PFLU_RS15500 LysR family transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.87 PS417_10300 protease 0.74 PS417_25900 LysR family transcriptional regulator low > 88
Pseudomonas putida KT2440 0.82 PP_2206 putative peptidase 0.27 PP_3560 Transcriptional regulator, LysR family low > 96
Pectobacterium carotovorum WPP14 0.75 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.27 HER17_RS16970 LysR family transcriptional regulator low > 75
Enterobacter asburiae PDN3 0.75 EX28DRAFT_0478 Collagenase and related proteases 0.16 EX28DRAFT_0220 Transcriptional regulator low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_01623 putative protease YdcP 0.17 OHPLBJKB_01315 HTH-type transcriptional regulator CynR low > 73
Escherichia fergusonii Becca 0.75 EFB2_01770 23S rRNA 5-hydroxycytidine synthase 0.17 EFB2_01468 HTH-type transcriptional regulator CynR low > 86
Escherichia coli Nissle 1917 0.75 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ 0.17 ECOLIN_RS13840 LysR family transcriptional regulator — —
Escherichia coli ECRC62 0.75 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.17 BNILDI_12775 yfeR Uncharacterized HTH-type transcriptional regulator YfeR low > 75
Escherichia coli ECRC98 0.75 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.18 JDDGAC_26180 yfeR Uncharacterized HTH-type transcriptional regulator YfeR low > 86
Escherichia coli BL21 0.75 ECD_01986 putative peptidase 0.17 ECD_02308 transcriptional regulator of yefH low > 61
Escherichia coli ECRC99 0.75 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.18 KEDOAH_05990 yfeR Uncharacterized HTH-type transcriptional regulator YfeR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3846 Putative protease 0.18 GFF2038 LysR family transcriptional regulator YfeR low > 78
Escherichia coli BW25113 0.75 b2081 yegQ predicted peptidase (NCBI) 0.17 b2409 yfeR predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECRC101 0.75 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.18 MCAODC_12760 yfeR Uncharacterized HTH-type transcriptional regulator YfeR low > 87
Enterobacter sp. TBS_079 0.75 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase 0.17 MPMX20_03302 HTH-type transcriptional regulator CynR low > 85
Escherichia coli ECOR27 0.75 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.17 NOLOHH_13910 yfeR Uncharacterized HTH-type transcriptional regulator YfeR low > 75
Escherichia coli ECRC100 0.75 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.18 OKFHMN_22230 yfeR Uncharacterized HTH-type transcriptional regulator YfeR low > 80
Rahnella sp. WP5 0.74 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ 0.19 EX31_RS20145 LysR family transcriptional regulator low > 89
Pantoea sp. MT58 0.74 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ 0.19 IAI47_05470 LysR family transcriptional regulator low > 76
Shewanella loihica PV-4 0.70 Shew_2783 peptidase U32 (RefSeq) 0.16 Shew_0287 DNA-binding transcriptional regulator IlvY (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.63 MPMX26_02040 23S rRNA 5-hydroxycytidine synthase 0.17 MPMX26_03182 HTH-type transcriptional regulator CysL — —

Not shown: 26 genomes with orthologs for PfGW456L13_2485 only; 22 genomes with orthologs for PfGW456L13_3348 only