Conservation of cofitness between JDDGAC_09800 and JDDGAC_17970 in Escherichia coli ECRC98

26 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_09800 ldtB L,D-transpeptidase 1.0 JDDGAC_17970 pldB lysophospholipase L2 0.93 14
Escherichia coli ECRC62 1.00 BNILDI_20795 ldtB L,D-transpeptidase 1.00 BNILDI_05055 pldB lysophospholipase L2 low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04365 L,D-transpeptidase 1.00 ECOLIN_RS21960 lysophospholipase L2
Escherichia coli BW25113 1.00 b0819 ybiS hypothetical protein (NCBI) 1.00 b3825 pldB lysophospholipase L(2) (NCBI) low > 76
Escherichia coli BL21 1.00 ECD_00786 L,D-transpeptidase linking Lpp to murein 1.00 ECD_03704 lysophospholipase L2 low > 61
Escherichia coli ECRC101 1.00 MCAODC_25380 ldtB L,D-transpeptidase 1.00 MCAODC_04850 pldB lysophospholipase L2 low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02894 putative L,D-transpeptidase YbiS 1.00 OHPLBJKB_04226 Lysophospholipase L2 low > 73
Escherichia coli ECOR27 1.00 NOLOHH_22515 ldtB L,D-transpeptidase 1.00 NOLOHH_06475 pldB lysophospholipase L2 low > 75
Escherichia fergusonii Becca 1.00 EFB2_03286 putative L,D-transpeptidase YbiS 1.00 EFB2_04812 Lysophospholipase L2 low > 86
Escherichia coli ECOR38 1.00 HEPCGN_01875 ldtB L,D-transpeptidase 1.00 HEPCGN_13045 pldB lysophospholipase L2 low > 87
Escherichia coli ECRC99 1.00 KEDOAH_21745 ldtB L,D-transpeptidase 1.00 KEDOAH_13805 pldB lysophospholipase L2
Escherichia coli ECRC102 1.00 NIAGMN_04210 ldtB L,D-transpeptidase 1.00 NIAGMN_12100 pldB lysophospholipase L2
Escherichia coli ECRC100 1.00 OKFHMN_06165 ldtB L,D-transpeptidase 1.00 OKFHMN_14345 pldB lysophospholipase L2 low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF716 L,D-transpeptidase YbiS 0.84 GFF251 Lysophospholipase L2 (EC 3.1.1.5) low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS09030 transpeptidase 0.80 BWI76_RS01260 lysophospholipase L2 low > 92
Enterobacter sp. TBS_079 0.91 MPMX20_01456 putative L,D-transpeptidase YbiS 0.83 MPMX20_04455 Lysophospholipase L2 low > 85
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2148 Uncharacterized protein conserved in bacteria 0.82 EX28DRAFT_4490 Lysophospholipase low > 76
Serratia liquefaciens MT49 0.73 IAI46_02600 L,D-transpeptidase family protein 0.63 IAI46_00785 lysophospholipase L2 low > 86
Rahnella sp. WP5 0.73 EX31_RS10780 L,D-transpeptidase family protein 0.61 EX31_RS15225 lysophospholipase L2 low > 89
Pantoea sp. MT58 0.72 IAI47_13415 L,D-transpeptidase family protein 0.62 IAI47_18340 lysophospholipase L2 low > 76
Dickeya dadantii 3937 0.69 DDA3937_RS03570 L,D-transpeptidase family protein 0.58 DDA3937_RS19830 lysophospholipase L2 low > 74
Dickeya dianthicola ME23 0.69 DZA65_RS03790 L,D-transpeptidase family protein 0.58 DZA65_RS21030 lysophospholipase L2 low > 75
Dickeya dianthicola 67-19 0.69 HGI48_RS03670 L,D-transpeptidase family protein 0.57 HGI48_RS19985 lysophospholipase L2 low > 71
Pectobacterium carotovorum WPP14 0.68 HER17_RS17580 L,D-transpeptidase family protein 0.55 HER17_RS01410 lysophospholipase L2 low > 75
Shewanella amazonensis SB2B 0.62 Sama_0726 ErfK/YbiS/YcfS/YnhG (RefSeq) 0.27 Sama_0083 alpha/beta hydrolase fold (RefSeq) 0.25 32
Shewanella sp. ANA-3 0.60 Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) 0.31 Shewana3_4119 alpha/beta hydrolase fold (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO3748 LysM domain protein (NCBI ptt file) 0.30 SO4733 lypA lysophospholipase L2 (NCBI ptt file) low > 76

Not shown: 6 genomes with orthologs for JDDGAC_09800 only; 15 genomes with orthologs for JDDGAC_17970 only