Conservation of cofitness between JDDGAC_25060 and JDDGAC_07130 in Escherichia coli ECRC98

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_25060 rseC SoxR-reducing system protein RseC 1.0 JDDGAC_07130 mfd transcription-repair coupling factor 0.98 4
Escherichia coli ECRC102 1.00 NIAGMN_19165 rseC SoxR-reducing system protein RseC 1.00 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECRC100 1.00 OKFHMN_21395 rseC SoxR-reducing system protein RseC 1.00 OKFHMN_03470 mfd transcription-repair coupling factor 0.74 75
Escherichia coli BL21 1.00 ECD_02464 SoxR iron-sulfur cluster reduction factor component 0.98 ECD_01110 transcription-repair coupling factor low > 61
Escherichia coli ECRC99 1.00 KEDOAH_06830 rseC SoxR-reducing system protein RseC 1.00 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 1.00 MCAODC_11925 rseC SoxR-reducing system protein RseC 1.00 MCAODC_22830 mfd transcription-repair coupling factor low > 87
Escherichia coli ECRC62 1.00 BNILDI_11870 rseC SoxR-reducing system protein RseC 1.00 BNILDI_19160 mfd transcription-repair coupling factor 0.81 17
Escherichia coli BW25113 1.00 b2570 rseC RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) 0.98 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli ECOR27 1.00 NOLOHH_13070 rseC SoxR-reducing system protein RseC 1.00 NOLOHH_20995 mfd transcription-repair coupling factor low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01137 Protein RseC 1.00 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia fergusonii Becca 0.99 EFB2_01326 Protein RseC 1.00 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECOR38 0.99 HEPCGN_20540 rseC SoxR-reducing system protein RseC 1.00 HEPCGN_24015 mfd transcription-repair coupling factor low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF2110 Sigma factor RpoE regulatory protein RseC 0.95 GFF3397 Transcription-repair coupling factor 0.77 13
Klebsiella michiganensis M5al 0.77 BWI76_RS21340 SoxR reducing system protein RseC 0.92 BWI76_RS11205 transcription-repair coupling factor low > 92
Enterobacter sp. TBS_079 0.76 MPMX20_03441 Protein RseC 0.91 MPMX20_01795 Transcription-repair-coupling factor 0.34 49
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0075 positive regulator of sigma(E), RseC/MucC 0.91 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Pantoea sp. MT58 0.63 IAI47_04865 SoxR-reducing system protein RseC 0.82 IAI47_11975 transcription-repair coupling factor low > 76
Rahnella sp. WP5 0.57 EX31_RS21815 SoxR-reducing system protein RseC 0.81 EX31_RS24520 transcription-repair coupling factor low > 89
Serratia liquefaciens MT49 0.53 IAI46_19570 SoxR-reducing system protein RseC 0.82 IAI46_10320 transcription-repair coupling factor low > 86
Erwinia tracheiphila SCR3 0.52 LU632_RS15410 rseC SoxR-reducing system protein RseC 0.83 LU632_RS14730 mfd transcription-repair coupling factor — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS05795 SoxR-reducing system protein RseC 0.83 HER17_RS08775 transcription-repair coupling factor low > 75
Dickeya dadantii 3937 0.40 DDA3937_RS15750 SoxR-reducing system protein RseC 0.81 DDA3937_RS13000 transcription-repair coupling factor low > 74
Dickeya dianthicola 67-19 0.39 HGI48_RS15835 SoxR-reducing system protein RseC 0.80 HGI48_RS13065 transcription-repair coupling factor — —
Dickeya dianthicola ME23 0.38 DZA65_RS16915 SoxR-reducing system protein RseC 0.80 DZA65_RS13530 transcription-repair coupling factor — —
Shewanella oneidensis MR-1 0.22 SO1345 rseC sigma-E factor regulatory protein RseC (NCBI ptt file) 0.55 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) — —
Shewanella loihica PV-4 0.20 Shew_1051 positive regulator of sigma E, RseC/MucC (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) — —
Marinobacter adhaerens HP15 0.20 HP15_778 positive regulator of sigma E, RseC/MucC 0.51 HP15_2257 transcription-repair-coupling factor — —
Pseudomonas stutzeri RCH2 0.20 Psest_3097 Positive regulator of sigma E activity 0.54 Psest_1653 transcription-repair coupling factor (mfd) — —
Kangiella aquimarina DSM 16071 0.19 B158DRAFT_2182 positive regulator of sigma(E), RseC/MucC 0.50 B158DRAFT_1800 transcription-repair coupling factor low > 40
Alteromonas macleodii MIT1002 0.18 MIT1002_02716 Sigma-E factor regulatory protein RseC 0.57 MIT1002_01646 Transcription-repair-coupling factor low > 70
Magnetospirillum magneticum AMB-1 0.16 AMB_RS13145 positive regulator of sigma E activity 0.33 AMB_RS12390 transcription-repair coupling factor low > 64

Not shown: 1 genomes with orthologs for JDDGAC_25060 only; 56 genomes with orthologs for JDDGAC_07130 only