Conservation of cofitness between HSERO_RS08590 and HSERO_RS00395 in Herbaspirillum seropedicae SmR1

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS00395 hypothetical protein 0.31 18
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15880 pseudouridine synthase 0.65 RR42_RS31030 hypothetical protein low > 128
Variovorax sp. OAS795 0.43 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.73 ABID97_RS24885 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase low > 91
Variovorax sp. SCN45 0.42 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.72 GFF2088 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 127
Fusobacterium nucleatum SB010 0.28 HUW76_04445 rRNA pseudouridine synthase 0.36 HUW76_03710 alpha/beta fold hydrolase low > 35
Escherichia coli ECRC102 0.26 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.59 NIAGMN_25880 ynbC Uncharacterized protein YnbC — —
Escherichia fergusonii Becca 0.26 EFB2_01673 Ribosomal small subunit pseudouridine synthase A 0.59 EFB2_02568 putative protein YnbC low > 86
Escherichia coli ECRC98 0.26 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.59 JDDGAC_04235 ynbC Uncharacterized protein YnbC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 0.59 OHPLBJKB_02304 putative protein YnbC low > 73
Escherichia coli BW25113 0.26 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) 0.59 b1410 ynbC predicted hydrolase (NCBI) low > 76
Escherichia coli ECRC101 0.26 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.59 MCAODC_16190 ynbC Uncharacterized protein YnbC low > 87
Escherichia coli ECRC62 0.26 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.59 BNILDI_17860 ynbC Uncharacterized protein YnbC low > 75
Escherichia coli ECRC100 0.26 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.59 OKFHMN_01745 ynbC Uncharacterized protein YnbC low > 80
Escherichia coli ECOR27 0.26 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.59 NOLOHH_19405 ynbC Uncharacterized protein YnbC low > 75
Escherichia coli ECOR38 0.26 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.58 HEPCGN_26095 ynbC Uncharacterized protein YnbC low > 87
Escherichia coli BL21 0.26 ECD_02113 16S rRNA pseudouridine(516) synthase 0.59 ECD_01365 putative esterase low > 61
Escherichia coli Nissle 1917 0.26 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 0.59 ECOLIN_RS08165 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4611.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.63 Xcc-8004.662.1 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 74
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.71 Pf1N1B4_1952 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 87
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_04690 16S rRNA pseudouridine(516) synthase 0.70 AO356_15100 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.70 Pf6N2E2_4953 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 103
Pseudomonas sp. RS175 0.19 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.70 PFR28_03922 putative protein YnbC low > 88
Pseudomonas sp. S08-1 0.18 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.69 OH686_12590 Putative lipase in cluster with Phosphatidate cytidylyltransferase low > 80
Pseudomonas simiae WCS417 0.17 PS417_07010 pseudouridine synthase 0.68 PS417_28395 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.17 PFLU_RS07085 pseudouridine synthase 0.69 PFLU_RS30060 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS07085 pseudouridine synthase 0.69 PFLU_RS30060 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase low > 109

Not shown: 46 genomes with orthologs for HSERO_RS08590 only; 0 genomes with orthologs for HSERO_RS00395 only