Conservation of cofitness between HER17_RS12895 and HER17_RS20780 in Pectobacterium carotovorum WPP14

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12895 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 1.0 HER17_RS20780 lipopolysaccharide heptosyltransferase RfaC 0.80 6
Serratia liquefaciens MT49 0.80 IAI46_17305 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.77 IAI46_24745 lipopolysaccharide heptosyltransferase RfaC — —
Erwinia tracheiphila SCR3 0.75 LU632_RS17465 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.70 LU632_RS21925 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Rahnella sp. WP5 0.74 EX31_RS19120 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.77 EX31_RS14405 lipopolysaccharide heptosyltransferase RfaC low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3761 Lipoprotein spr precursor 0.70 GFF390 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) low > 78
Dickeya dadantii 3937 0.72 DDA3937_RS09195 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.77 DDA3937_RS20450 lipopolysaccharide heptosyltransferase RfaC — —
Enterobacter sp. TBS_079 0.72 MPMX20_03141 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.72 MPMX20_00112 Lipopolysaccharide heptosyltransferase 1 — —
Dickeya dianthicola ME23 0.72 DZA65_RS09540 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.78 DZA65_RS00815 lipopolysaccharide heptosyltransferase RfaC — —
Dickeya dianthicola 67-19 0.72 HGI48_RS09235 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.77 HGI48_RS00760 lipopolysaccharide heptosyltransferase RfaC — —
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0386 Cell wall-associated hydrolases (invasion-associated proteins) 0.71 EX28DRAFT_3873 lipopolysaccharide heptosyltransferase I — —
Escherichia coli ECRC100 0.71 OKFHMN_23400 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.72 OKFHMN_15690 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01534 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.71 OHPLBJKB_00079 Lipopolysaccharide heptosyltransferase 1 — —
Escherichia coli ECRC98 0.71 JDDGAC_27360 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.72 JDDGAC_19315 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Escherichia coli ECOR38 0.71 HEPCGN_22665 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.71 HEPCGN_14535 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Escherichia coli ECRC62 0.71 BNILDI_13895 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.71 BNILDI_03940 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Escherichia coli BW25113 0.71 b2175 spr predicted peptidase, outer membrane lipoprotein (NCBI) 0.72 b3621 rfaC ADP-heptose:LPS heptosyl transferase I (NCBI) low > 76
Escherichia coli ECOR27 0.71 NOLOHH_14975 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.73 NOLOHH_07570 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Escherichia coli ECRC102 0.71 NIAGMN_21165 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.72 NIAGMN_13450 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Escherichia coli BL21 0.71 ECD_02105 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase 0.71 ECD_03478 ADP-heptose:LPS heptosyl transferase I — —
Escherichia fergusonii Becca 0.71 EFB2_01681 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.72 EFB2_00190 Lipopolysaccharide heptosyltransferase 1 — —
Escherichia coli ECRC99 0.71 KEDOAH_04785 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.72 KEDOAH_12460 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Escherichia coli ECRC101 0.71 MCAODC_14450 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.72 MCAODC_06200 rfaC lipopolysaccharide heptosyltransferase RfaC — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.72 ECOLIN_RS20655 lipopolysaccharide heptosyltransferase RfaC low > 55
Klebsiella michiganensis M5al 0.71 BWI76_RS19770 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.68 BWI76_RS27270 ADP-heptose--LPS heptosyl transferase I — —
Pantoea sp. MT58 0.67 IAI47_06625 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.73 IAI47_00680 lipopolysaccharide heptosyltransferase RfaC — —
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_02660 peptidase P60 0.51 AO353_12880 ADP-heptose--LPS heptosyltransferase low > 101
Pseudomonas sp. RS175 0.26 PFR28_03213 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.49 PFR28_05064 Lipopolysaccharide heptosyltransferase 1 — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_16170 hypothetical protein 0.10 CA264_20500 glycosyl transferase — —
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_19115 peptidase P60 0.48 AO356_08945 ADP-heptose--LPS heptosyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3684 NLP/P60 0.50 Psyr_0521 Glycosyl transferase, family 9 — —
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3684 NLP/P60 0.50 Psyr_0521 Glycosyl transferase, family 9 — —
Pseudomonas sp. S08-1 0.23 OH686_05015 NLP/P60 family protein 0.48 OH686_09685 lipopolysaccharide heptosyltransferase I — —

Not shown: 3 genomes with orthologs for HER17_RS12895 only; 24 genomes with orthologs for HER17_RS20780 only