Conservation of cofitness between HER17_RS21350 and HER17_RS20300 in Pectobacterium carotovorum WPP14

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS21350 EAL domain-containing protein 1.0 HER17_RS20300 amino acid ABC transporter permease 0.65 3
Pantoea sp. MT58 0.45 IAI47_01435 EAL domain-containing protein 0.81 IAI47_02365 amino acid ABC transporter permease low > 76
Escherichia coli ECRC101 0.30 MCAODC_23905 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.80 MCAODC_08145 yhdY Inner membrane amino-acid ABC transporter permease protein YhdY low > 87
Escherichia coli ECRC102 0.30 NIAGMN_23805 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.80 NIAGMN_15385 yhdY Inner membrane amino-acid ABC transporter permease protein YhdY — —
Escherichia coli ECRC99 0.30 KEDOAH_23215 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.80 KEDOAH_10525 yhdY Inner membrane amino-acid ABC transporter permease protein YhdY — —
Escherichia coli ECRC100 0.30 OKFHMN_04530 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.80 OKFHMN_17625 yhdY Inner membrane amino-acid ABC transporter permease protein YhdY — —
Enterobacter sp. TBS_079 0.21 MPMX20_02720 putative cyclic di-GMP phosphodiesterase PdeD 0.78 MPMX20_04179 Inner membrane amino-acid ABC transporter permease protein YhdY low > 85
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_452 Rtn protein 0.66 Pf6N2E2_5404 ABC transporter for D-Alanine, permease component 1 (from data) low > 103
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_5006 Rtn protein 0.66 Pf1N1B4_915 Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) low > 87
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_2932 Rtn protein 0.66 PfGW456L13_1700 Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) low > 87
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS14595 EAL domain-containing protein 0.66 PFLU_RS04970 amino acid ABC transporter permease low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS14595 EAL domain-containing protein 0.66 PFLU_RS04970 amino acid ABC transporter permease low > 109
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_22830 diguanylate phosphodiesterase 0.67 AO356_17390 amino acid ABC transporter permease low > 104
Enterobacter asburiae PDN3 0.20 EX28DRAFT_1790 FOG: EAL domain 0.81 EX28DRAFT_3323 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family low > 76
Pseudomonas simiae WCS417 0.20 PS417_14020 diguanylate phosphodiesterase 0.66 PS417_04910 amino acid ABC transporter permease low > 88
Escherichia fergusonii Becca 0.20 EFB2_01680 putative cyclic di-GMP phosphodiesterase PdeN 0.80 EFB2_00553 Inner membrane amino-acid ABC transporter permease protein YhdY low > 86
Escherichia coli ECOR38 0.20 HEPCGN_22660 pdeN cyclic di-GMP phosphodiesterase 0.80 HEPCGN_16445 yhdY Inner membrane amino-acid ABC transporter permease protein YhdY low > 87
Escherichia coli BW25113 0.20 b2176 rtn hypothetical protein (NCBI) 0.79 b3270 yhdY putative transport system permease protein (VIMSS) low > 76
Escherichia coli ECOR27 0.20 NOLOHH_14970 pdeN cyclic di-GMP phosphodiesterase 0.81 NOLOHH_09415 yhdY Inner membrane amino-acid ABC transporter permease protein YhdY low > 75
Escherichia coli Nissle 1917 0.20 ECOLIN_RS12725 cyclic di-GMP phosphodiesterase 0.77 ECOLIN_RS18785 amino acid ABC transporter permease low > 55
Escherichia coli ECRC62 0.20 BNILDI_13890 pdeN cyclic di-GMP phosphodiesterase 0.81 BNILDI_02105 yhdY Inner membrane amino-acid ABC transporter permease protein YhdY low > 75
Escherichia coli BL21 0.20 ECD_02106 resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase 0.80 ECD_03128 putative amino acid ABC transporter permease low > 61
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_26940 diguanylate phosphodiesterase 0.66 AO353_04605 amino acid ABC transporter permease low > 101
Pseudomonas putida KT2440 0.19 PP_3435 conserved protein of unknown function 0.67 PP_1299 putative amino acid ABC transporter - membrane subunit low > 96
Dickeya dadantii 3937 0.18 DDA3937_RS13005 EAL domain-containing protein 0.83 DDA3937_RS01260 amino acid ABC transporter permease low > 74
Dickeya dianthicola ME23 0.18 DZA65_RS13535 EAL domain-containing protein 0.82 DZA65_RS01290 amino acid ABC transporter permease low > 75
Dickeya dianthicola 67-19 0.17 HGI48_RS13070 EAL domain-containing protein 0.82 HGI48_RS01245 amino acid ABC transporter permease low > 71
Erwinia tracheiphila SCR3 0.17 LU632_RS13190 cyclic diguanylate phosphodiesterase 0.80 LU632_RS19780 amino acid ABC transporter permease low > 74

Not shown: 9 genomes with orthologs for HER17_RS21350 only; 19 genomes with orthologs for HER17_RS20300 only