Conservation of cofitness between HER17_RS12895 and HER17_RS16020 in Pectobacterium carotovorum WPP14

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12895 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 1.0 HER17_RS16020 branched-chain amino acid transport system II carrier protein 0.76 12
Serratia liquefaciens MT49 0.80 IAI46_17305 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.85 IAI46_04795 branched-chain amino acid transport system II carrier protein low > 86
Erwinia tracheiphila SCR3 0.75 LU632_RS17465 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.77 LU632_RS18890 brnQ branched-chain amino acid transport system II carrier protein low > 74
Rahnella sp. WP5 0.74 EX31_RS19120 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.80 EX31_RS22065 branched-chain amino acid transport system II carrier protein low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3761 Lipoprotein spr precursor 0.79 GFF4299 Branched-chain amino acid transport system carrier protein low > 78
Dickeya dadantii 3937 0.72 DDA3937_RS09195 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.89 DDA3937_RS05445 branched-chain amino acid transport system II carrier protein low > 74
Enterobacter sp. TBS_079 0.72 MPMX20_03141 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.79 MPMX20_00988 Branched-chain amino acid transport system 2 carrier protein low > 85
Dickeya dianthicola ME23 0.72 DZA65_RS09540 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.89 DZA65_RS05830 branched-chain amino acid transport system II carrier protein low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS09235 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.89 HGI48_RS05505 branched-chain amino acid transport system II carrier protein low > 71
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0386 Cell wall-associated hydrolases (invasion-associated proteins) 0.79 EX28DRAFT_2573 branched-chain amino acid uptake carrier low > 76
Escherichia fergusonii Becca 0.71 EFB2_01681 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.79 EFB2_03656 Branched-chain amino acid transport system 2 carrier protein low > 86
Escherichia coli ECRC102 0.71 NIAGMN_21165 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 NIAGMN_06590 brnQ branched-chain amino acid transporter carrier protein BrnQ — —
Escherichia coli ECRC101 0.71 MCAODC_14450 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 MCAODC_27760 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 87
Escherichia coli Nissle 1917 0.71 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 ECOLIN_RS02420 branched-chain amino acid transporter carrier protein BrnQ low > 55
Escherichia coli ECOR38 0.71 HEPCGN_22665 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 HEPCGN_07175 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 87
Escherichia coli BL21 0.71 ECD_02105 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase 0.79 ECD_00349 branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val low > 61
Escherichia coli ECRC98 0.71 JDDGAC_27360 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 JDDGAC_12190 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.67 40
Escherichia coli ECOR27 0.71 NOLOHH_14975 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 NOLOHH_01465 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 75
Escherichia coli ECRC99 0.71 KEDOAH_04785 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 KEDOAH_19430 brnQ branched-chain amino acid transporter carrier protein BrnQ — —
Escherichia coli ECRC62 0.71 BNILDI_13895 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 BNILDI_22880 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01534 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.79 OHPLBJKB_03275 Branched-chain amino acid transport system 2 carrier protein low > 73
Escherichia coli BW25113 0.71 b2175 spr predicted peptidase, outer membrane lipoprotein (NCBI) 0.79 b0401 brnQ predicted branched chain amino acid transporter (LIV-II) (NCBI) low > 76
Escherichia coli ECRC100 0.71 OKFHMN_23400 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 OKFHMN_08535 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 80
Klebsiella michiganensis M5al 0.71 BWI76_RS19770 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.79 BWI76_RS06240 branched-chain amino acid transport system 2 carrier protein BrnQ low > 92
Pantoea sp. MT58 0.67 IAI47_06625 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.82 IAI47_14835 branched-chain amino acid transporter carrier protein BrnQ low > 76
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_02660 peptidase P60 0.66 AO353_01810 branched-chain amino acid ABC transporter substrate-binding protein low > 101
Pseudomonas sp. RS175 0.26 PFR28_03213 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.67 PFR28_03091 Branched-chain amino acid transport system 2 carrier protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_19115 peptidase P60 0.67 AO356_19720 branched-chain amino acid ABC transporter substrate-binding protein low > 104
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3684 NLP/P60 0.66 Psyr_2015 Branched-chain amino acid transport system II carrier protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3684 NLP/P60 0.66 Psyr_2015 Branched-chain amino acid transport system II carrier protein — —
Pseudomonas sp. S08-1 0.23 OH686_05015 NLP/P60 family protein 0.68 OH686_01945 branched-chain amino acid transport system II carrier protein low > 80

Not shown: 4 genomes with orthologs for HER17_RS12895 only; 16 genomes with orthologs for HER17_RS16020 only