Conservation of cofitness between HER17_RS06010 and HER17_RS12895 in Pectobacterium carotovorum WPP14

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06010 Fe-S cluster assembly transcriptional regulator IscR 1.0 HER17_RS12895 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.67 18
Dickeya dadantii 3937 0.95 DDA3937_RS15550 Fe-S cluster assembly transcriptional regulator IscR 0.72 DDA3937_RS09195 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Dickeya dianthicola ME23 0.94 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR 0.72 DZA65_RS09540 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 75
Dickeya dianthicola 67-19 0.94 HGI48_RS15650 Fe-S cluster assembly transcriptional regulator IscR 0.72 HGI48_RS09235 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Serratia liquefaciens MT49 0.92 IAI46_19360 Fe-S cluster assembly transcriptional regulator IscR 0.80 IAI46_17305 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 86
Rahnella sp. WP5 0.88 EX31_RS20550 Fe-S cluster assembly transcriptional regulator IscR 0.74 EX31_RS19120 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 89
Erwinia tracheiphila SCR3 0.86 LU632_RS17875 iscR Fe-S cluster assembly transcriptional regulator IscR 0.75 LU632_RS17465 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 74
Pantoea sp. MT58 0.82 IAI47_05000 Fe-S cluster assembly transcriptional regulator IscR 0.67 IAI47_06625 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2436 Iron-sulfur cluster regulator IscR 0.73 GFF3761 Lipoprotein spr precursor low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01178 HTH-type transcriptional regulator IscR 0.71 OHPLBJKB_01534 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase low > 73
Enterobacter sp. TBS_079 0.71 MPMX20_03412 HTH-type transcriptional regulator IscR 0.72 MPMX20_03141 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase low > 85
Escherichia coli ECRC101 0.71 MCAODC_12145 iscR Fe-S cluster assembly transcriptional regulator IscR 0.71 MCAODC_14450 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 87
Escherichia coli ECRC99 0.71 KEDOAH_06605 iscR Fe-S cluster assembly transcriptional regulator IscR 0.71 KEDOAH_04785 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Escherichia coli ECRC98 0.71 JDDGAC_25290 iscR Fe-S cluster assembly transcriptional regulator IscR 0.71 JDDGAC_27360 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 86
Escherichia coli ECRC102 0.71 NIAGMN_19385 iscR Fe-S cluster assembly transcriptional regulator IscR 0.71 NIAGMN_21165 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase — —
Escherichia coli ECOR27 0.71 NOLOHH_13285 iscR Fe-S cluster assembly transcriptional regulator IscR 0.71 NOLOHH_14975 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 75
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0108 transcriptional regulator, BadM/Rrf2 family 0.71 EX28DRAFT_0386 Cell wall-associated hydrolases (invasion-associated proteins) low > 76
Escherichia coli BW25113 0.71 b2531 iscR DNA-binding transcriptional repressor (NCBI) 0.71 b2175 spr predicted peptidase, outer membrane lipoprotein (NCBI) low > 76
Escherichia coli ECRC100 0.71 OKFHMN_21615 iscR Fe-S cluster assembly transcriptional regulator IscR 0.71 OKFHMN_23400 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 80
Escherichia fergusonii Becca 0.71 EFB2_01359 HTH-type transcriptional regulator IscR 0.71 EFB2_01681 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase low > 86
Escherichia coli BL21 0.71 ECD_02423 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor 0.71 ECD_02105 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase low > 61
Escherichia coli ECRC62 0.71 BNILDI_12085 iscR Fe-S cluster assembly transcriptional regulator IscR 0.71 BNILDI_13895 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 75
Escherichia coli Nissle 1917 0.71 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR 0.71 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 55
Escherichia coli ECOR38 0.71 HEPCGN_20755 iscR Fe-S cluster assembly transcriptional regulator IscR 0.71 HEPCGN_22665 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 87
Klebsiella michiganensis M5al 0.70 BWI76_RS21165 Fe-S cluster assembly transcriptional regulator IscR 0.71 BWI76_RS19770 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase low > 92
Pseudomonas sp. RS175 0.61 PFR28_00285 HTH-type transcriptional regulator IscR 0.26 PFR28_03213 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase low > 88
Pseudomonas sp. S08-1 0.61 OH686_17470 iron-sulfur cluster assembly transcription factor IscR 0.23 OH686_05015 NLP/P60 family protein 0.49 10
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_06650 transcriptional regulator 0.26 AO356_19115 peptidase P60 low > 104
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_15830 transcriptional regulator 0.27 AO353_02660 peptidase P60 low > 101
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.24 Psyr_3684 NLP/P60 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.24 Psyr_3684 NLP/P60 — —

Not shown: 32 genomes with orthologs for HER17_RS06010 only; 4 genomes with orthologs for HER17_RS12895 only