Conservation of cofitness between HER17_RS12895 and HER17_RS11785 in Pectobacterium carotovorum WPP14

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12895 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 1.0 HER17_RS11785 MurR/RpiR family transcriptional regulator 0.83 2
Serratia liquefaciens MT49 0.80 IAI46_17305 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.89 IAI46_14580 MurR/RpiR family transcriptional regulator low > 86
Erwinia tracheiphila SCR3 0.75 LU632_RS17465 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.71 LU632_RS13365 MurR/RpiR family transcriptional regulator low > 74
Rahnella sp. WP5 0.74 EX31_RS19120 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.88 EX31_RS10635 MurR/RpiR family transcriptional regulator low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3761 Lipoprotein spr precursor 0.82 GFF1632 Phosphogluconate repressor HexR, RpiR family low > 78
Dickeya dadantii 3937 0.72 DDA3937_RS09195 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.92 DDA3937_RS10130 MurR/RpiR family transcriptional regulator low > 74
Enterobacter sp. TBS_079 0.72 MPMX20_03141 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.82 MPMX20_02758 HTH-type transcriptional regulator HexR low > 85
Dickeya dianthicola ME23 0.72 DZA65_RS09540 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.91 DZA65_RS10575 MurR/RpiR family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS09235 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.91 HGI48_RS10160 MurR/RpiR family transcriptional regulator low > 71
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0386 Cell wall-associated hydrolases (invasion-associated proteins) 0.83 EX28DRAFT_0703 transcriptional regulator, RpiR family low > 76
Escherichia coli ECRC98 0.71 JDDGAC_27360 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 JDDGAC_00900 hexR DNA-binding transcriptional regulator HexR low > 86
Escherichia fergusonii Becca 0.71 EFB2_01681 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.83 EFB2_02089 HTH-type transcriptional regulator HexR low > 86
Escherichia coli ECRC101 0.71 MCAODC_14450 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 MCAODC_19080 hexR DNA-binding transcriptional regulator HexR low > 87
Escherichia coli Nissle 1917 0.71 ECOLIN_RS12720 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 ECOLIN_RS10325 DNA-binding transcriptional regulator HexR low > 55
Escherichia coli ECOR27 0.71 NOLOHH_14975 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 NOLOHH_16840 hexR DNA-binding transcriptional regulator HexR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01534 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.83 OHPLBJKB_01875 HTH-type transcriptional regulator HexR low > 73
Escherichia coli ECRC100 0.71 OKFHMN_23400 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 OKFHMN_26325 hexR DNA-binding transcriptional regulator HexR low > 80
Escherichia coli ECRC102 0.71 NIAGMN_21165 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 NIAGMN_01735 hexR DNA-binding transcriptional regulator HexR — —
Escherichia coli ECRC99 0.71 KEDOAH_04785 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 KEDOAH_01780 hexR DNA-binding transcriptional regulator HexR — —
Escherichia coli BW25113 0.71 b2175 spr predicted peptidase, outer membrane lipoprotein (NCBI) 0.83 b1853 yebK predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECOR38 0.71 HEPCGN_22665 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 HEPCGN_04730 hexR DNA-binding transcriptional regulator HexR low > 87
Escherichia coli ECRC62 0.71 BNILDI_13895 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.83 BNILDI_15635 hexR DNA-binding transcriptional regulator HexR low > 75
Escherichia coli BL21 0.71 ECD_02105 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase 0.83 ECD_01824 putative DNA-binding transcriptional regulator low > 61
Klebsiella michiganensis M5al 0.71 BWI76_RS19770 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.82 BWI76_RS18110 transcriptional regulator HexR low > 92
Pantoea sp. MT58 0.67 IAI47_06625 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase 0.67 IAI47_08490 MurR/RpiR family transcriptional regulator low > 76
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_02660 peptidase P60 0.55 AO353_03365 transcriptional regulator low > 101
Pseudomonas sp. RS175 0.26 PFR28_03213 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase 0.55 PFR28_00572 HTH-type transcriptional regulator HexR low > 88
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_19115 peptidase P60 0.56 AO356_05165 transcriptional regulator low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3684 NLP/P60 0.54 Psyr_1119 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) — —
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3684 NLP/P60 0.54 Psyr_1119 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) low > 86
Pseudomonas sp. S08-1 0.23 OH686_05015 NLP/P60 family protein 0.55 OH686_02440 Phosphogluconate repressor HexR, RpiR family low > 80

Not shown: 4 genomes with orthologs for HER17_RS12895 only; 41 genomes with orthologs for HER17_RS11785 only