Conservation of cofitness between GFF4076 and GFF4688 in Sphingobium sp. HT1-2

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF4076 Two-component transcriptional response regulator, LuxR family 1.0 GFF4688 L-alanine-DL-glutamate epimerase (EC 5.1.1.n1) 0.75 3
Sphingomonas koreensis DSMZ 15582 0.90 Ga0059261_1369 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.47 Ga0059261_1652 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily low > 68
Agrobacterium fabrum C58 0.72 Atu0970 two component response regulator 0.42 Atu1648 mandelate racemase/muconate lactonizing enzyme family protein — —
Rhizobium sp. OAE497 0.71 ABIE40_RS05660 response regulator transcription factor 0.42 ABIE40_RS10435 N-acetyl-D-Glu racemase DgcA low > 107
Xanthobacter sp. DMC5 0.66 GFF3491 Transcriptional regulatory protein PhoP 0.39 GFF989 L-Ala-D/L-Glu epimerase — —
Rhodospirillum rubrum S1H 0.62 Rru_A3187 Two component Transcriptional regulator, Winged helix family (NCBI) 0.38 Rru_A2556 Mandelate racemase/muconate lactonizing enzyme (NCBI) low > 58
Caulobacter crescentus NA1000 0.61 CCNA_02854 two-component response regulator 0.45 CCNA_03211 L-Ala-D/L-Glu racemase low > 66
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02854 two-component response regulator 0.45 CCNA_03211 L-Ala-D/L-Glu racemase low > 67
Lysobacter sp. OAE881 0.51 ABIE51_RS03940 response regulator transcription factor 0.29 ABIE51_RS15080 dipeptide epimerase low > 62
Enterobacter asburiae PDN3 0.44 EX28DRAFT_3057 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.35 EX28DRAFT_0997 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily low > 76
Erwinia amylovora T8 0.44 OLJFJH_07175 two-component system response regulator PmrA 0.38 OLJFJH_13715 L-Ala-D/L-Glu epimerase low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF3138 Two-component system response regulator QseB 0.38 GFF2677 L-alanine-DL-glutamate epimerase low > 78
Rahnella sp. WP5 0.43 EX31_RS08605 two-component system response regulator PmrA 0.39 EX31_RS06345 L-Ala-D/L-Glu epimerase low > 89
Klebsiella michiganensis M5al 0.43 BWI76_RS24335 two-component system response regulator QseB 0.40 BWI76_RS12500 dipeptide epimerase low > 92
Escherichia coli BW25113 0.42 b3025 qseB DNA-binding response regulator in two-component regulatory system with QseC (NCBI) 0.40 b1325 ycjG putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS) low > 76
Enterobacter sp. TBS_079 0.42 MPMX20_03863 Transcriptional regulatory protein QseB 0.38 MPMX20_02451 L-Ala-D/L-Glu epimerase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_00677 Transcriptional regulatory protein QseB 0.40 OHPLBJKB_02357 L-Ala-D/L-Glu epimerase 0.26 71
Escherichia coli BL21 0.42 ECD_02897 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC 0.40 ECD_01302 L-Ala-D/L-Glu epimerase low > 61
Escherichia fergusonii Becca 0.42 EFB2_00788 Transcriptional regulatory protein QseB 0.40 EFB2_02602 L-Ala-D/L-Glu epimerase low > 86
Escherichia coli ECOR38 0.42 HEPCGN_17740 Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC 0.41 HEPCGN_25895 ycjG L-Ala-D/L-Glu epimerase low > 88
Escherichia coli ECRC102 0.42 NIAGMN_16645 Transcriptional regulatory protein QseB 0.40 NIAGMN_26465 ycjG L-Ala-D/L-Glu epimerase low > 80
Escherichia coli ECRC98 0.42 JDDGAC_22515 Transcriptional regulatory protein QseB 0.40 JDDGAC_04840 ycjG L-Ala-D/L-Glu epimerase low > 87
Escherichia coli ECRC62 0.42 BNILDI_00855 Transcriptional regulatory protein QseB 0.40 BNILDI_18140 ycjG L-Ala-D/L-Glu epimerase low > 75
Pectobacterium carotovorum WPP14 0.42 HER17_RS11640 two-component system response regulator PhoP 0.40 HER17_RS06650 L-Ala-D/L-Glu epimerase low > 75
Escherichia coli ECRC100 0.42 OKFHMN_18880 Transcriptional regulatory protein QseB 0.40 OKFHMN_02295 ycjG L-Ala-D/L-Glu epimerase 0.53 25
Escherichia coli ECRC99 0.42 KEDOAH_09265 Transcriptional regulatory protein QseB 0.40 KEDOAH_26480 ycjG L-Ala-D/L-Glu epimerase — —
Escherichia coli ECRC101 0.42 MCAODC_09395 Transcriptional regulatory protein QseB 0.40 MCAODC_15975 ycjG L-Ala-D/L-Glu epimerase low > 88
Escherichia coli ECOR27 0.42 NOLOHH_10660 Transcriptional regulatory protein QseB 0.40 NOLOHH_19990 ycjG L-Ala-D/L-Glu epimerase low > 76
Escherichia coli Nissle 1917 0.42 ECOLIN_RS17425 quorum sensing response regulator transcription factor QseB 0.40 ECOLIN_RS07955 L-Ala-D/L-Glu epimerase — —
Klebsiella pneumoniae MKP103 0.41 KDGMDA_05180 two-component system response regulator QseB 0.39 KDGMDA_19975 L-Ala-D/L-Glu epimerase low > 95
Serratia liquefaciens MT49 0.41 IAI46_10395 two-component system response regulator PhoP 0.39 IAI46_13460 L-Ala-D/L-Glu epimerase low > 86

Not shown: 54 genomes with orthologs for GFF4076 only; 8 genomes with orthologs for GFF4688 only