Conservation of cofitness between EX31_RS07960 and EX31_RS14995 in Rahnella sp. WP5

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 EX31_RS14995 acetolactate synthase 2 small subunit 0.69 3
Serratia liquefaciens MT49 0.72 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.74 IAI46_24355 acetolactate synthase 2 small subunit low > 86
Pectobacterium carotovorum WPP14 0.66 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.70 HER17_RS01065 acetolactate synthase 2 small subunit low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 HGI48_RS20305 acetolactate synthase 2 small subunit low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 DDA3937_RS20165 acetolactate synthase 2 small subunit low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 DZA65_RS21345 acetolactate synthase 2 small subunit low > 75
Enterobacter sp. TBS_079 0.61 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 MPMX20_04501 Acetolactate synthase isozyme 2 small subunit low > 85
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.68 EX28DRAFT_4441 acetolactate synthase, small subunit (EC 2.2.1.6) 0.37 39
Pantoea sp. MT58 0.60 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.70 IAI47_01025 acetolactate synthase 2 small subunit low > 76
Escherichia coli ECOR38 0.60 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 HEPCGN_13360 Acetolactate synthase isozyme 2 small subunit low > 87
Escherichia coli Nissle 1917 0.60 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 ECOLIN_RS21655 acetolactate synthase 2 small subunit low > 55
Escherichia coli BW25113 0.60 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.65 b3769 ilvM acetolactate synthase II, small subunit (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 OHPLBJKB_04284 Acetolactate synthase isozyme 2 small subunit low > 73
Escherichia coli ECRC99 0.60 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 KEDOAH_13500 Acetolactate synthase isozyme 2 small subunit — —
Escherichia coli ECRC100 0.60 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 OKFHMN_14650 Acetolactate synthase isozyme 2 small subunit low > 80
Escherichia coli ECRC98 0.60 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 JDDGAC_18270 Acetolactate synthase isozyme 2 small subunit low > 86
Escherichia coli ECRC102 0.60 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 NIAGMN_12405 Acetolactate synthase isozyme 2 small subunit — —
Escherichia coli ECRC101 0.60 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 MCAODC_05155 Acetolactate synthase isozyme 2 small subunit low > 87
Escherichia coli ECOR27 0.59 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 NOLOHH_06785 Acetolactate synthase isozyme 2 small subunit low > 75
Escherichia coli ECRC62 0.59 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 BNILDI_04740 Acetolactate synthase isozyme 2 small subunit low > 75
Escherichia fergusonii Becca 0.59 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 EFB2_04867 Acetolactate synthase isozyme 2 small subunit low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.66 GFF2903 Acetolactate synthase small subunit (EC 2.2.1.6) low > 78
Escherichia coli BL21 0.59 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.65 ECD_03647 acetolactate synthase 2 small subunit low > 61
Klebsiella michiganensis M5al 0.59 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.78 BWI76_RS00965 acetolactate synthase 2 small subunit low > 92
Erwinia tracheiphila SCR3 0.55 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 LU632_RS24410 ilvM acetolactate synthase 2 small subunit low > 74
Shewanella oneidensis MR-1 0.41 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.36 SO4346 ilvM acetolactate synthase II, small subunit (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.36 Shewana3_0357 ilvM acetolactate synthase 2 regulatory subunit (RefSeq) low > 73
Shewanella loihica PV-4 0.40 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.34 Shew_0290 ilvM acetolactate synthase 2 regulatory subunit (RefSeq) low > 60

Not shown: 69 genomes with orthologs for EX31_RS07960 only; 0 genomes with orthologs for EX31_RS14995 only