| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_03421 | | xylose divergent operon transcriptional activator | 1.0 | ECD_04085 | | 2':3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 61 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_12215 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | KEDOAH_16110 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS20410 | | D-xylose utilization transcriptional activator XylR | 0.99 | ECOLIN_RS24475 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 55 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_19565 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | JDDGAC_15685 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 86 |
| Escherichia coli BW25113 | 1.00 | b3569 | xylR | DNA-binding transcriptional activator, xylose-binding (NCBI) | 0.99 | b4213 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00135 | | Xylose operon regulatory protein | 0.99 | OHPLBJKB_03820 | | '2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase' transl_table=11 | low | > 73 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_13695 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | NIAGMN_09895 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_06450 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | MCAODC_02560 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 87 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_03665 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | BNILDI_07215 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 75 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_14820 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | HEPCGN_10240 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 87 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_07880 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | NOLOHH_04305 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 75 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_15935 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | OKFHMN_12045 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 80 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00238 | | Xylose operon regulatory protein | 0.99 | EFB2_04315 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.43 | 2 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.91 | GFF442 | | Xylose activator XylR (AraC family) | 0.91 | GFF866 | | '2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)' transl_table=11 | low | > 78 |
| Enterobacter asburiae PDN3 | 0.91 | EX28DRAFT_3834 | | Transcriptional regulators | 0.89 | EX28DRAFT_3400 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_00161 | | Xylose operon regulatory protein | 0.88 | MPMX20_00491 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 85 |
| Klebsiella michiganensis M5al | 0.89 | BWI76_RS27045 | | XylR family transcriptional regulator | 0.88 | BWI76_RS02730 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | low | > 92 |
| Pantoea sp. MT58 | 0.84 | IAI47_00175 | | XylR family transcriptional regulator | 0.78 | IAI47_02690 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 76 |
| Rahnella sp. WP5 | 0.84 | EX31_RS09745 | | XylR family transcriptional regulator | 0.79 | EX31_RS08725 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 89 |
| Serratia liquefaciens MT49 | 0.82 | IAI46_00300 | | DNA-binding transcriptional regulator | 0.81 | IAI46_01740 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.82 | HER17_RS21065 | | XylR family transcriptional regulator | 0.79 | HER17_RS03950 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.81 | HGI48_RS00330 | | XylR family transcriptional regulator | 0.78 | HGI48_RS17240 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 71 |
| Dickeya dianthicola ME23 | 0.81 | DZA65_RS00330 | | DNA-binding transcriptional regulator | 0.78 | DZA65_RS18330 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 75 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS20915 | | DNA-binding transcriptional regulator | 0.78 | DDA3937_RS17185 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.49 | ABZR86_RS14435 | | DNA-binding transcriptional regulator | 0.31 | ABZR86_RS16000 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 74 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS18215 | | DNA-binding transcriptional regulator | 0.34 | ABZR87_RS04330 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | low | > 80 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.17 | BT3609 | | transcriptional regulator (NCBI ptt file) | 0.12 | BT1236 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (NCBI ptt file) | low | > 81 |
| Bacteroides ovatus ATCC 8483 | 0.17 | BACOVA_03406 | | transcriptional regulator, AraC family | 0.14 | BACOVA_00529 | | 5'-nucleotidase, C-terminal domain protein | low | > 94 |
Not shown: 14 genomes with orthologs for ECD_03421 only; 23 genomes with orthologs for ECD_04085 only