Conservation of cofitness between ECD_03636 and ECD_03639 in Escherichia coli BL21

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03636 D-ribose ABC transporter permease 1.0 ECD_03639 transcriptional repressor of ribose metabolism 0.47 7
Escherichia coli ECOR27 1.00 NOLOHH_06875 rbsC ribose ABC transporter permease 0.99 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECRC102 1.00 NIAGMN_12495 rbsC ribose ABC transporter permease 0.99 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECRC62 1.00 BNILDI_04650 rbsC ribose ABC transporter permease 0.99 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECRC101 1.00 MCAODC_05245 rbsC ribose ABC transporter permease 0.99 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli BW25113 1.00 b3750 rbsC ribose ABC transporter permease protein (NCBI) 1.00 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) 0.25 29
Escherichia coli ECRC100 1.00 OKFHMN_14740 rbsC ribose ABC transporter permease 0.99 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR low > 80
Escherichia fergusonii Becca 1.00 EFB2_04883 Ribose import permease protein RbsC 1.00 EFB2_04880 Ribose operon repressor low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21560 ribose ABC transporter permease 0.96 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR low > 55
Escherichia coli ECRC99 1.00 KEDOAH_13410 rbsC ribose ABC transporter permease 0.99 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECRC98 1.00 JDDGAC_18360 rbsC ribose ABC transporter permease 0.99 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR low > 86
Escherichia coli ECOR38 1.00 HEPCGN_13450 rbsC ribose ABC transporter permease 0.99 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR low > 87
Enterobacter sp. TBS_079 0.93 MPMX20_04617 Ribose import permease protein RbsC 0.88 MPMX20_04614 Ribose operon repressor low > 85
Enterobacter asburiae PDN3 0.93 EX28DRAFT_4026 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 0.89 EX28DRAFT_4029 transcriptional regulator, LacI family low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF1707 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) 0.89 GFF1704 Ribose operon repressor 0.40 66
Klebsiella michiganensis M5al 0.92 BWI76_RS00280 ribose ABC transporter permease 0.85 BWI76_RS00295 transcriptional regulator RbsR low > 92
Pectobacterium carotovorum WPP14 0.90 HER17_RS21540 ribose ABC transporter permease 0.70 HER17_RS21525 ribose operon transcriptional repressor RbsR 0.59 61
Dickeya dadantii 3937 0.87 DDA3937_RS00040 ribose ABC transporter permease 0.71 DDA3937_RS00055 ribose operon transcriptional repressor RbsR low > 74
Serratia liquefaciens MT49 0.87 IAI46_25065 ribose ABC transporter permease 0.72 IAI46_25050 ribose operon transcriptional repressor RbsR low > 86
Dickeya dianthicola ME23 0.87 DZA65_RS22305 ribose ABC transporter permease 0.65 DZA65_RS22290 substrate-binding domain-containing protein low > 75
Dickeya dianthicola 67-19 0.87 HGI48_RS21325 ribose ABC transporter permease 0.70 HGI48_RS21310 ribose operon transcriptional repressor RbsR low > 71
Rahnella sp. WP5 0.85 EX31_RS06180 ribose ABC transporter permease 0.73 EX31_RS06195 ribose operon transcriptional repressor RbsR 0.37 33
Pantoea sp. MT58 0.85 IAI47_00360 ribose ABC transporter permease 0.73 IAI47_00375 ribose operon transcriptional repressor RbsR low > 76
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_14655 ribose ABC transporter permease 0.56 CSW01_14670 transcriptional repressor PurR low > 62
Azospirillum sp. SherDot2 0.46 MPMX19_03759 Ribose import permease protein RbsC 0.31 MPMX19_02768 Ribose operon repressor low > 112
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS05325 ribose ABC transporter permease 0.38 HSERO_RS11495 LacI family transcription regulator low > 78
Rhizobium sp. OAE497 0.37 ABIE40_RS24750 ABC transporter permease 0.22 ABIE40_RS26635 LacI family DNA-binding transcriptional regulator low > 107
Acidovorax sp. GW101-3H11 0.30 Ac3H11_3036 Fructose ABC transporter, permease component FrcC 0.37 Ac3H11_1840 Ribose operon repressor low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF198 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) 0.24 GFF4454 Transcriptional regulator, LacI family low > 90
Variovorax sp. OAS795 0.27 ABID97_RS00430 ABC transporter permease 0.38 ABID97_RS24770 LacI family DNA-binding transcriptional regulator low > 91
Variovorax sp. SCN45 0.27 GFF3691 ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) 0.37 GFF2137 Ribose operon repressor low > 127

Not shown: 28 genomes with orthologs for ECD_03636 only; 8 genomes with orthologs for ECD_03639 only