Conservation of cofitness between ECD_00290 and ECD_03346 in Escherichia coli BL21

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00290 cytosine transporter 1.0 ECD_03346 16S rRNA m(2)G1516 methyltransferase, SAM-dependent low > 61
Escherichia coli BW25113 1.00 b0336 codB cytosine transporter (NCBI) 1.00 b3497 yhiQ predicted SAM-dependent methyltransferase (NCBI) low > 76
Escherichia fergusonii Becca 1.00 EFB2_03702 Cytosine permease 1.00 EFB2_00318 Ribosomal RNA small subunit methyltransferase J low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS02170 cytosine permease 1.00 ECOLIN_RS19980 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03335 Cytosine permease 1.00 OHPLBJKB_00206 Ribosomal RNA small subunit methyltransferase J low > 73
Escherichia coli ECRC62 1.00 BNILDI_23165 codB cytosine permease 0.99 BNILDI_03205 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Escherichia coli ECOR27 1.00 NOLOHH_01750 codB cytosine permease 0.99 NOLOHH_08355 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Escherichia coli ECRC98 1.00 JDDGAC_12505 codB cytosine permease 1.00 JDDGAC_20050 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 86
Escherichia coli ECRC102 1.00 NIAGMN_06905 codB cytosine permease 1.00 NIAGMN_14185 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli ECRC100 1.00 OKFHMN_08850 codB cytosine permease 1.00 OKFHMN_16420 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 80
Escherichia coli ECRC101 1.00 MCAODC_28080 codB cytosine permease 1.00 MCAODC_06935 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Escherichia coli ECRC99 1.00 KEDOAH_19115 codB cytosine permease 1.00 KEDOAH_11725 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli ECOR38 1.00 HEPCGN_07465 codB cytosine permease 1.00 HEPCGN_15330 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF2959 Cytosine permease 0.95 GFF518 rRNA small subunit methyltransferase J low > 78
Pseudomonas simiae WCS417 0.33 PS417_09810 cytosine permease 0.35 PS417_06100 SAM-dependent methyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_112 Cytosine permease 0.36 Pf1N1B4_3060 SAM-dependent methyltransferase (EC 2.1.1.-) — —
Pseudomonas sp. RS175 0.31 PFR28_02853 Cytosine permease 0.35 PFR28_00376 Ribosomal RNA small subunit methyltransferase J low > 88
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_21250 cytosine permease 0.35 AO356_06145 SAM-dependent methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.30 Pf6N2E2_35 Cytosine permease 0.35 Pf6N2E2_3094 SAM-dependent methyltransferase (EC 2.1.1.-) low > 103
Pseudomonas stutzeri RCH2 0.29 Psest_0774 cytosine permease (from data) 0.38 Psest_1563 Protein of unknown function (DUF548). low > 67
Klebsiella michiganensis M5al 0.27 BWI76_RS07860 cytosine permease 0.93 BWI76_RS26605 16S rRNA (guanine(1516)-N(2))-methyltransferase low > 92
Pseudomonas putida KT2440 0.26 PP_3187 Cytosine transporter 0.37 PP_1513 Ribosomal RNA small subunit methyltransferase J low > 96
Serratia liquefaciens MT49 0.19 IAI46_21565 cytosine permease 0.74 IAI46_24205 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 86
Dickeya dadantii 3937 0.17 DDA3937_RS04415 cytosine permease 0.68 DDA3937_RS21270 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 74
Dickeya dianthicola 67-19 0.16 HGI48_RS04390 cytosine permease 0.66 HGI48_RS00040 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 71
Pectobacterium carotovorum WPP14 0.16 HER17_RS16980 cytosine permease 0.73 HER17_RS21305 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Dickeya dianthicola ME23 0.16 DZA65_RS04305 cytosine permease 0.66 DZA65_RS00030 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Pantoea sp. MT58 0.15 IAI47_07690 cytosine permease 0.77 IAI47_01350 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.07 Psyr_0545 Permease for cytosine/purines, uracil, thiamine, allantoin 0.40 Psyr_1325 Protein of unknown function DUF548 low > 86
Pseudomonas syringae pv. syringae B728a 0.07 Psyr_0545 Permease for cytosine/purines, uracil, thiamine, allantoin 0.40 Psyr_1325 Protein of unknown function DUF548 — —

Not shown: 5 genomes with orthologs for ECD_00290 only; 12 genomes with orthologs for ECD_03346 only