Conservation of cofitness between ECD_00806 and ECD_01917 in Escherichia coli BL21

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 1.0 ECD_01917 putrescine importer, low affinity 0.57 1
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 1.00 OHPLBJKB_01686 Low-affinity putrescine importer PlaP low > 73
Escherichia coli BW25113 1.00 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 1.00 b2014 yeeF putative amino acid/amine transport protein (VIMSS) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 HEPCGN_03255 plaP putrescine/proton symporter PlaP low > 87
Escherichia coli ECRC99 1.00 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 KEDOAH_03600 plaP putrescine/proton symporter PlaP — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 1.00 ECOLIN_RS11915 putrescine/proton symporter PlaP — —
Escherichia coli ECRC98 1.00 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 JDDGAC_28660 plaP putrescine/proton symporter PlaP low > 86
Escherichia coli ECOR27 1.00 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NOLOHH_15875 plaP putrescine/proton symporter PlaP low > 75
Escherichia coli ECRC62 1.00 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 BNILDI_14775 plaP putrescine/proton symporter PlaP low > 75
Escherichia coli ECRC102 1.00 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NIAGMN_22495 plaP putrescine/proton symporter PlaP — —
Escherichia coli ECRC101 1.00 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 MCAODC_20390 plaP putrescine/proton symporter PlaP low > 87
Escherichia coli ECRC100 1.00 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 OKFHMN_24550 plaP putrescine/proton symporter PlaP low > 80
Escherichia fergusonii Becca 1.00 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 1.00 EFB2_01842 Low-affinity putrescine importer PlaP low > 86
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.96 EX28DRAFT_0544 Amino acid transporters low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.98 MPMX20_02998 Low-affinity putrescine importer PlaP low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.99 GFF3916 Putrescine importer low > 78
Klebsiella michiganensis M5al 0.85 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase 0.90 BWI76_RS18905 putrescine/spermidine ABC transporter low > 92
Pantoea sp. MT58 0.75 IAI47_13090 serine hydrolase 0.79 IAI47_07130 APC family permease low > 76
Pectobacterium carotovorum WPP14 0.72 HER17_RS12545 serine hydrolase 0.78 HER17_RS12140 APC family permease low > 75
Serratia liquefaciens MT49 0.71 IAI46_08285 serine hydrolase 0.79 IAI46_17155 APC family permease low > 86
Dickeya dadantii 3937 0.68 DDA3937_RS09420 serine hydrolase 0.82 DDA3937_RS09815 APC family permease low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS09435 serine hydrolase 0.82 HGI48_RS09825 APC family permease low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.82 DZA65_RS10150 APC family permease low > 75
Rahnella sp. WP5 0.65 EX31_RS09695 D-alanyl-D-alanine carboxypeptidase 0.87 EX31_RS03025 APC family permease low > 89
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.13 Psyr_2379 amino acid/polyamine/organocation transporter, APC superfamily low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.13 Psyr_2379 amino acid/polyamine/organocation transporter, APC superfamily low > 86
Paraburkholderia graminis OAS925 0.35 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.09 ABIE53_000447 APA family basic amino acid/polyamine antiporter low > 113
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.08 H281DRAFT_02180 amino acid/polyamine/organocation transporter, APC superfamily low > 103

Not shown: 46 genomes with orthologs for ECD_00806 only; 3 genomes with orthologs for ECD_01917 only