Conservation of cofitness between ECD_00419 and ECD_01245 in Escherichia coli BL21

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00419 DUF454 family inner membrane protein 1.0 ECD_01245 23S rRNA pseudouridine(2605) synthase 0.53 16
Escherichia coli ECRC102 1.00 NIAGMN_06230 ybaN DUF454 domain-containing protein 0.99 NIAGMN_26800 rluB 23S rRNA pseudouridine(2605) synthase RluB — —
Escherichia coli ECRC62 1.00 BNILDI_22525 ybaN DUF454 domain-containing protein 0.99 BNILDI_18445 rluB 23S rRNA pseudouridine(2605) synthase RluB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03206 Inner membrane protein YbaN 1.00 OHPLBJKB_02415 Ribosomal large subunit pseudouridine synthase B low > 73
Escherichia coli ECRC98 1.00 JDDGAC_11825 ybaN DUF454 domain-containing protein 0.99 JDDGAC_05175 rluB 23S rRNA pseudouridine(2605) synthase RluB low > 86
Escherichia coli ECOR27 1.00 NOLOHH_01105 ybaN DUF454 domain-containing protein 0.99 NOLOHH_20295 rluB 23S rRNA pseudouridine(2605) synthase RluB low > 75
Escherichia coli BW25113 1.00 b0468 ybaN conserved inner membrane protein (NCBI) 1.00 b1269 rluB 23S rRNA pseudouridylate synthase (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_08175 ybaN DUF454 domain-containing protein 0.99 OKFHMN_02630 rluB 23S rRNA pseudouridine(2605) synthase RluB low > 80
Escherichia coli ECRC99 1.00 KEDOAH_19790 ybaN DUF454 domain-containing protein 0.99 KEDOAH_26135 rluB 23S rRNA pseudouridine(2605) synthase RluB — —
Escherichia coli ECOR38 1.00 HEPCGN_06790 ybaN DUF454 domain-containing protein 1.00 HEPCGN_25560 rluB 23S rRNA pseudouridine(2605) synthase RluB low > 87
Escherichia fergusonii Becca 0.99 EFB2_03590 Inner membrane protein YbaN 1.00 EFB2_02658 Ribosomal large subunit pseudouridine synthase B low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS02785 DUF454 family protein 1.00 ECOLIN_RS07635 23S rRNA pseudouridine(2605) synthase RluB — —
Escherichia coli ECRC101 0.99 MCAODC_27400 ybaN DUF454 domain-containing protein 0.99 MCAODC_15635 rluB 23S rRNA pseudouridine(2605) synthase RluB low > 87
Enterobacter sp. TBS_079 0.80 MPMX20_01070 Inner membrane protein YbaN 0.95 MPMX20_02507 Ribosomal large subunit pseudouridine synthase B low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF4386 FIG039061: hypothetical protein related to heme utilization 0.98 GFF2719 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) low > 78
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2490 Uncharacterized protein conserved in bacteria 0.91 EX28DRAFT_0940 pseudouridine synthase low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS06810 hypothetical protein 0.91 BWI76_RS11880 23S rRNA pseudouridylate synthase B low > 92
Pantoea sp. MT58 0.62 IAI47_14485 DUF454 family protein 0.85 IAI47_09210 23S rRNA pseudouridine(2605) synthase RluB low > 76
Dickeya dianthicola 67-19 0.56 HGI48_RS05820 DUF454 family protein 0.82 HGI48_RS10500 23S rRNA pseudouridine(2605) synthase RluB — —
Dickeya dadantii 3937 0.56 DDA3937_RS05770 DUF454 family protein 0.82 DDA3937_RS10500 23S rRNA pseudouridine(2605) synthase RluB low > 74
Pectobacterium carotovorum WPP14 0.56 HER17_RS15715 DUF454 family protein 0.83 HER17_RS10900 23S rRNA pseudouridine(2605) synthase RluB low > 75
Serratia liquefaciens MT49 0.55 IAI46_05220 DUF454 family protein 0.86 IAI46_13995 23S rRNA pseudouridine(2605) synthase RluB low > 86
Dickeya dianthicola ME23 0.54 DZA65_RS06145 DUF454 family protein 0.82 DZA65_RS10980 23S rRNA pseudouridine(2605) synthase RluB low > 75
Shewanella amazonensis SB2B 0.46 Sama_1308 hypothetical protein (RefSeq) 0.64 Sama_2124 pseudouridine synthase, Rsu (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_05355 DUF454 domain-containing protein 0.66 CSW01_05970 23S rRNA pseudouridylate synthase B — —
Shewanella sp. ANA-3 0.37 Shewana3_2448 hypothetical protein (RefSeq) 0.64 Shewana3_1525 ribosomal large subunit pseudouridine synthase B (RefSeq) low > 73
Shewanella loihica PV-4 0.35 Shew_2237 hypothetical protein (RefSeq) 0.65 Shew_2246 pseudouridine synthase (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.24 MPMX26_02504 Inner membrane protein YbaN 0.50 MPMX26_02450 Ribosomal large subunit pseudouridine synthase B low > 36

Not shown: 32 genomes with orthologs for ECD_00419 only; 5 genomes with orthologs for ECD_01245 only