Conservation of cofitness between ECD_03797 and ECD_00786 in Escherichia coli BL21

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03797 sensory histidine kinase in two-component regulatory system with CpxR 1.0 ECD_00786 L,D-transpeptidase linking Lpp to murein low > 61
Escherichia coli ECRC99 1.00 KEDOAH_14305 cpxA envelope stress sensor histidine kinase CpxA 1.00 KEDOAH_21745 ldtB L,D-transpeptidase
Escherichia coli ECRC101 1.00 MCAODC_04350 cpxA envelope stress sensor histidine kinase CpxA 1.00 MCAODC_25380 ldtB L,D-transpeptidase 0.56 43
Escherichia coli ECOR38 1.00 HEPCGN_12495 cpxA envelope stress sensor histidine kinase CpxA 1.00 HEPCGN_01875 ldtB L,D-transpeptidase 0.78 12
Escherichia coli ECRC62 1.00 BNILDI_05540 cpxA envelope stress sensor histidine kinase CpxA 1.00 BNILDI_20795 ldtB L,D-transpeptidase 0.80 13
Escherichia coli ECRC102 1.00 NIAGMN_11605 cpxA envelope stress sensor histidine kinase CpxA 1.00 NIAGMN_04210 ldtB L,D-transpeptidase
Escherichia coli ECRC98 1.00 JDDGAC_17475 cpxA envelope stress sensor histidine kinase CpxA 1.00 JDDGAC_09800 ldtB L,D-transpeptidase 0.84 34
Escherichia coli Nissle 1917 1.00 ECOLIN_RS22535 envelope stress sensor histidine kinase CpxA 1.00 ECOLIN_RS04365 L,D-transpeptidase
Escherichia coli ECRC100 1.00 OKFHMN_13850 cpxA envelope stress sensor histidine kinase CpxA 1.00 OKFHMN_06165 ldtB L,D-transpeptidase low > 80
Escherichia coli ECOR27 1.00 NOLOHH_05985 cpxA envelope stress sensor histidine kinase CpxA 1.00 NOLOHH_22515 ldtB L,D-transpeptidase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04139 Sensor histidine kinase CpxA 1.00 OHPLBJKB_02894 putative L,D-transpeptidase YbiS low > 73
Escherichia fergusonii Becca 1.00 EFB2_04706 Sensor histidine kinase CpxA 1.00 EFB2_03286 putative L,D-transpeptidase YbiS 0.49 76
Escherichia coli BW25113 1.00 b3911 cpxA two-component sensor protein (NCBI) 1.00 b0819 ybiS hypothetical protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.90 GFF2279 Copper sensory histidine kinase CpxA 0.94 GFF716 L,D-transpeptidase YbiS low > 78
Enterobacter sp. TBS_079 0.89 MPMX20_04557 Sensor histidine kinase CpxA 0.91 MPMX20_01456 putative L,D-transpeptidase YbiS low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_4386 Signal transduction histidine kinase 0.90 EX28DRAFT_2148 Uncharacterized protein conserved in bacteria low > 76
Klebsiella michiganensis M5al 0.87 BWI76_RS00715 two-component sensor histidine kinase 0.93 BWI76_RS09030 transpeptidase low > 92
Rahnella sp. WP5 0.81 EX31_RS14325 envelope stress sensor histidine kinase CpxA 0.73 EX31_RS10780 L,D-transpeptidase family protein low > 89
Serratia liquefaciens MT49 0.81 IAI46_24665 envelope stress sensor histidine kinase CpxA 0.73 IAI46_02600 L,D-transpeptidase family protein low > 86
Pantoea sp. MT58 0.80 IAI47_00755 envelope stress sensor histidine kinase CpxA 0.72 IAI47_13415 L,D-transpeptidase family protein 0.42 12
Dickeya dadantii 3937 0.76 DDA3937_RS00775 envelope stress sensor histidine kinase CpxA 0.69 DDA3937_RS03570 L,D-transpeptidase family protein low > 74
Dickeya dianthicola ME23 0.75 DZA65_RS21615 envelope stress sensor histidine kinase CpxA 0.69 DZA65_RS03790 L,D-transpeptidase family protein low > 75
Dickeya dianthicola 67-19 0.75 HGI48_RS20600 envelope stress sensor histidine kinase CpxA 0.69 HGI48_RS03670 L,D-transpeptidase family protein 0.65 51
Pectobacterium carotovorum WPP14 0.75 HER17_RS00660 envelope stress sensor histidine kinase CpxA 0.68 HER17_RS17580 L,D-transpeptidase family protein low > 75
Shewanella amazonensis SB2B 0.28 Sama_3433 sensor protein CpxA (RefSeq) 0.62 Sama_0726 ErfK/YbiS/YcfS/YnhG (RefSeq) low > 62
Shewanella sp. ANA-3 0.26 Shewana3_0252 ATPase domain-containing protein (RefSeq) 0.60 Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.25 SO4478 cpxA sensor protein CpxA (NCBI ptt file) 0.59 SO3748 LysM domain protein (NCBI ptt file) low > 76
Pseudomonas fluorescens GW456-L13 0.14 PfGW456L13_4411 Putative two-component system sensor kinase 0.33 PfGW456L13_2221 ErfK/YbiS/YcfS/YnhG family protein low > 87

Not shown: 5 genomes with orthologs for ECD_03797 only; 5 genomes with orthologs for ECD_00786 only