Conservation of cofitness between CSW01_12815 and CSW01_13430 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12815 RNA polymerase sigma-54 factor 1.0 CSW01_13430 succinate dehydrogenase/fumarate reductase iron-sulfur subunit 0.49 20
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF2946 RNA polymerase sigma-54 factor RpoN 0.74 GFF1997 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) low > 78
Klebsiella pneumoniae MKP103 0.63 KDGMDA_06080 RNA polymerase factor sigma-54 0.74 KDGMDA_10945 fumarate reductase iron-sulfur protein low > 95
Escherichia fergusonii Becca 0.63 EFB2_00621 RNA polymerase sigma-54 factor 0.74 EFB2_04380 Fumarate reductase iron-sulfur subunit — —
Escherichia coli ECOR38 0.63 HEPCGN_16815 rpoN RNA polymerase factor sigma-54 0.74 HEPCGN_10575 frdB fumarate reductase iron-sulfur protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_00498 RNA polymerase sigma-54 factor 0.74 OHPLBJKB_03887 Fumarate reductase iron-sulfur subunit — —
Escherichia coli ECRC62 0.63 BNILDI_01795 rpoN RNA polymerase factor sigma-54 0.74 BNILDI_06880 frdB fumarate reductase iron-sulfur protein — —
Escherichia coli ECRC100 0.63 OKFHMN_17940 rpoN RNA polymerase factor sigma-54 0.74 OKFHMN_12350 frdB fumarate reductase iron-sulfur protein — —
Escherichia coli ECRC98 0.63 JDDGAC_21565 rpoN RNA polymerase factor sigma-54 0.74 JDDGAC_15985 frdB fumarate reductase iron-sulfur protein — —
Escherichia coli ECRC101 0.63 MCAODC_08460 rpoN RNA polymerase factor sigma-54 0.74 MCAODC_02860 frdB fumarate reductase iron-sulfur protein — —
Escherichia coli ECRC99 0.63 KEDOAH_10210 rpoN RNA polymerase factor sigma-54 0.74 KEDOAH_15815 frdB fumarate reductase iron-sulfur protein — —
Escherichia coli BL21 0.63 ECD_03067 RNA polymerase, sigma 54 (sigma N) factor 0.74 ECD_04025 fumarate reductase (anaerobic), Fe-S subunit low > 61
Escherichia coli Nissle 1917 0.63 ECOLIN_RS18425 RNA polymerase factor sigma-54 0.74 ECOLIN_RS26280 fumarate reductase iron-sulfur protein — —
Escherichia coli ECRC102 0.63 NIAGMN_15700 rpoN RNA polymerase factor sigma-54 0.74 NIAGMN_10195 frdB fumarate reductase iron-sulfur protein — —
Rahnella sp. WP5 0.63 EX31_RS12400 RNA polymerase factor sigma-54 0.73 EX31_RS08905 succinate dehydrogenase/fumarate reductase iron-sulfur subunit low > 89
Escherichia coli ECOR27 0.62 NOLOHH_09740 rpoN RNA polymerase factor sigma-54 0.74 NOLOHH_04610 frdB fumarate reductase iron-sulfur protein — —
Klebsiella michiganensis M5al 0.62 BWI76_RS25265 RNA polymerase factor sigma-54 0.74 BWI76_RS02450 succinate dehydrogenase/fumarate reductase iron-sulfur subunit — —
Escherichia coli BW25113 0.62 b3202 rpoN DNA-directed RNA polymerase subunit N (NCBI) 0.74 b4153 frdB fumarate reductase (anaerobic), Fe-S subunit (NCBI) — —
Enterobacter asburiae PDN3 0.62 EX28DRAFT_3256 RNA polymerase, sigma 54 subunit, RpoN/SigL 0.73 EX28DRAFT_3354 succinate dehydrogenase and fumarate reductase iron-sulfur protein — —
Serratia liquefaciens MT49 0.62 IAI46_22470 RNA polymerase factor sigma-54 0.75 IAI46_01545 succinate dehydrogenase/fumarate reductase iron-sulfur subunit — —
Pectobacterium carotovorum WPP14 0.62 HER17_RS20060 RNA polymerase factor sigma-54 0.74 HER17_RS02385 succinate dehydrogenase/fumarate reductase iron-sulfur subunit low > 75
Dickeya dianthicola 67-19 0.61 HGI48_RS01445 RNA polymerase factor sigma-54 0.74 HGI48_RS19065 succinate dehydrogenase/fumarate reductase iron-sulfur subunit low > 71
Dickeya dadantii 3937 0.61 DDA3937_RS01530 RNA polymerase factor sigma-54 0.73 DDA3937_RS18970 succinate dehydrogenase/fumarate reductase iron-sulfur subunit low > 74
Dickeya dianthicola ME23 0.61 DZA65_RS01510 RNA polymerase factor sigma-54 0.74 DZA65_RS20185 succinate dehydrogenase/fumarate reductase iron-sulfur subunit low > 75
Enterobacter sp. TBS_079 0.61 MPMX20_04108 RNA polymerase sigma-54 factor 0.74 MPMX20_00436 Fumarate reductase iron-sulfur subunit — —
Erwinia tracheiphila SCR3 0.60 LU632_RS21280 rpoN RNA polymerase factor sigma-54 0.71 LU632_RS01915 succinate dehydrogenase/fumarate reductase iron-sulfur subunit — —
Erwinia tracheiphila HP pepo 2.2 0.60 IJEDHG_13740 rpoN RNA polymerase factor sigma-54 0.71 IJEDHG_07000 succinate dehydrogenase/fumarate reductase iron-sulfur subunit low > 61
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_0427 RNA polymerase, sigma 54 subunit, RpoN (RefSeq) 0.23 DvMF_2460 frdB fumarate reductase iron-sulfur subunit (RefSeq) — —
Xanthobacter sp. DMC5 0.28 GFF4467 RNA polymerase sigma-54 factor 2 0.28 GFF4070 Fumarate reductase iron-sulfur subunit — —
Bacteroides ovatus ATCC 8483 0.18 BACOVA_01616 RNA polymerase sigma-54 factor 0.13 BACOVA_02673 succinate dehydrogenase/fumarate reductase iron-sulfur subunit — —
Bacteroides thetaiotaomicron VPI-5482 0.18 BT2521 RNA polymerase sigma-54 (NCBI ptt file) 0.13 BT3055 succinate dehydrogenase iron-sulfur protein (NCBI ptt file) — —

Not shown: 83 genomes with orthologs for CSW01_12815 only; 1 genomes with orthologs for CSW01_13430 only