Conservation of cofitness between CSW01_06405 and CSW01_12875 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06405 murein L,D-transpeptidase 1.0 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.48 10
Pantoea agglomerans CFBP13505 P0401 0.26 PagCFBP13505_RS04550 L,D-transpeptidase 0.69 PagCFBP13505_RS11350 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Dickeya dianthicola ME23 0.26 DZA65_RS13465 L,D-transpeptidase 0.68 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Enterobacter asburiae PDN3 0.26 EX28DRAFT_2011 Uncharacterized protein conserved in bacteria 0.69 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 76
Enterobacter sp. TBS_079 0.26 MPMX20_01583 putative L,D-transpeptidase YcbB 0.70 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 85
Dickeya dianthicola 67-19 0.26 HGI48_RS13005 L,D-transpeptidase 0.68 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.53 48
Dickeya dadantii 3937 0.25 DDA3937_RS12930 L,D-transpeptidase 0.69 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Erwinia tracheiphila SCR3 0.25 LU632_RS09885 ldtD L,D-transpeptidase 0.67 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 73
Erwinia tracheiphila HP pepo 2.2 0.25 IJEDHG_20385 ldtD L D-transpeptidase 0.67 IJEDHG_06780 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase — —
Klebsiella pneumoniae MKP103 0.25 KDGMDA_18050 L D-transpeptidase 0.71 KDGMDA_11310 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 95
Pectobacterium carotovorum WPP14 0.25 HER17_RS12045 L,D-transpeptidase 0.69 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF3682 L,D-transpeptidase YcbB 0.70 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 78
Pantoea sp. MT58 0.25 IAI47_12780 L,D-transpeptidase 0.69 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 76
Klebsiella michiganensis M5al 0.25 BWI76_RS09850 L,D-transpeptidase 0.70 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 92
Escherichia coli ECOR27 0.25 NOLOHH_21960 ldtD L,D-transpeptidase 0.71 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 76
Escherichia coli BW25113 0.24 b0925 ycbB predicted carboxypeptidase (NCBI) 0.71 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) low > 76
Escherichia fergusonii Becca 0.24 EFB2_03139 putative L,D-transpeptidase YcbB 0.71 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 86
Escherichia coli ECRC62 0.24 BNILDI_20215 ldtD L,D-transpeptidase 0.71 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Escherichia coli BL21 0.24 ECD_00929 murein L,D-transpeptidase 0.71 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 61
Escherichia coli Nissle 1917 0.24 ECOLIN_RS04895 L,D-transpeptidase 0.71 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_02742 hypothetical protein 0.71 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 74
Escherichia coli ECOR38 0.24 HEPCGN_23125 ldtD L,D-transpeptidase 0.71 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 88
Escherichia coli ECRC99 0.24 KEDOAH_22335 ldtD L,D-transpeptidase 0.71 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC101 0.24 MCAODC_24790 ldtD L,D-transpeptidase 0.71 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Escherichia coli ECRC102 0.24 NIAGMN_03120 ldtD L,D-transpeptidase 0.71 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 80
Escherichia coli ECRC100 0.24 OKFHMN_05400 ldtD L,D-transpeptidase 0.71 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 79
Escherichia coli ECRC98 0.24 JDDGAC_09010 ldtD L,D-transpeptidase 0.71 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Rhodanobacter sp. FW510-T8 0.17 OKGIIK_00395 Peptidoglycan-binding protein 0.55 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase low > 53
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_1111 cell wall degradation protein 0.62 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_26185 peptidoglycan-binding protein 0.62 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 104
Pseudomonas lactucae CFBP13502 0.16 GEMAOFIL_03475 putative L,D-transpeptidase YcbB 0.63 GEMAOFIL_05114 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 96

Not shown: 2 genomes with orthologs for CSW01_06405 only; 60 genomes with orthologs for CSW01_12875 only