Conservation of cofitness between CSW01_06225 and CSW01_10265 in Vibrio cholerae E7946 ATCC 55056

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06225 cytidine deaminase 1.0 CSW01_10265 c-type cytochrome biogenesis protein CcmF 0.67 3
Rahnella sp. WP5 0.44 EX31_RS18660 cytidine deaminase 0.67 EX31_RS19745 heme lyase CcmF/NrfE family subunit low > 89
Serratia liquefaciens MT49 0.43 IAI46_07940 cytidine deaminase 0.65 IAI46_18085 heme lyase CcmF/NrfE family subunit low > 87
Pectobacterium carotovorum WPP14 0.42 HER17_RS13485 cytidine deaminase 0.63 HER17_RS09055 heme lyase CcmF/NrfE family subunit low > 75
Pantoea sp. MT58 0.42 IAI47_06760 cytidine deaminase 0.65 IAI47_06090 heme lyase CcmF/NrfE family subunit low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF3795 Cytidine deaminase (EC 3.5.4.5) 0.58 GFF4877 Cytochrome c heme lyase subunit CcmF — —
Erwinia amylovora T8 0.41 OLJFJH_11875 cytidine deaminase 0.63 OLJFJH_11100 heme lyase NrfEFG subunit NrfE low > 58
Escherichia fergusonii Becca 0.40 EFB2_01713 Cytidine deaminase 0.60 EFB2_01660 Cytochrome c-type biogenesis protein CcmF low > 86
Escherichia coli Nissle 1917 0.40 ECOLIN_RS12545 cytidine deaminase 0.60 ECOLIN_RS12835 cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01568 Cytidine deaminase 0.60 OHPLBJKB_01515 Cytochrome c-type biogenesis protein CcmF low > 74
Escherichia coli BW25113 0.40 b2143 cdd cytidine deaminase (NCBI) 0.60 b2196 ccmF heme lyase, CcmF subunit (NCBI) low > 76
Escherichia coli BL21 0.40 ECD_02072 cytidine/deoxycytidine deaminase 0.60 ECD_02123 heme lyase, CcmF subunit low > 61
Escherichia coli ECRC62 0.40 BNILDI_14060 cdd cytidine deaminase 0.60 BNILDI_13800 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 75
Escherichia coli ECOR27 0.40 NOLOHH_15140 cdd cytidine deaminase 0.60 NOLOHH_14880 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 76
Pantoea agglomerans CFBP13505 P0401 0.40 PagCFBP13505_RS00860 cytidine deaminase 0.64 PagCFBP13505_RS00045 heme lyase CcmF/NrfE family subunit low > 74
Escherichia coli ECOR38 0.40 HEPCGN_22835 cdd cytidine deaminase 0.60 HEPCGN_22570 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 88
Escherichia coli ECRC100 0.40 OKFHMN_23570 cdd cytidine deaminase 0.60 OKFHMN_23305 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 79
Escherichia coli ECRC101 0.40 MCAODC_14620 cdd cytidine deaminase 0.60 MCAODC_14355 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli ECRC102 0.40 NIAGMN_21335 cdd cytidine deaminase 0.60 NIAGMN_21070 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 80
Escherichia coli ECRC99 0.40 KEDOAH_04615 cdd cytidine deaminase 0.60 KEDOAH_04880 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Shewanella loihica PV-4 0.39 Shew_1610 cytidine deaminase (RefSeq) 0.51 Shew_0193 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 60
Escherichia coli ECRC98 0.39 JDDGAC_27525 cdd cytidine deaminase 0.60 JDDGAC_27265 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Klebsiella pneumoniae MKP103 0.39 KDGMDA_26590 cytidine deaminase 0.62 KDGMDA_23845 cytochrome c maturation protein CcmE low > 95
Shewanella sp. ANA-3 0.38 Shewana3_2573 Cytidine deaminase (EC 3.5.4.5) (from data) 0.50 Shewana3_0234 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 73
Shewanella oneidensis MR-1 0.37 SO2791 cdd Cytidine deaminase (EC 3.5.4.5) (from data) 0.49 SO0266 ccmF-1 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.37 Sama_1974 Cytidine deaminase (EC 3.5.4.5) (from data) 0.51 Sama_0248 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 62

Not shown: 8 genomes with orthologs for CSW01_06225 only; 53 genomes with orthologs for CSW01_10265 only