Conservation of cofitness between CSW01_04065 and CSW01_07815 in Vibrio cholerae E7946 ATCC 55056

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04065 D-amino acid dehydrogenase small subunit 1.0 CSW01_07815 YhcH/YjgK/YiaL family protein 0.52 4
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS02725 D-amino acid dehydrogenase 0.25 PagCFBP13505_RS19295 YhcH/YjgK/YiaL family protein low > 74
Serratia liquefaciens MT49 0.56 IAI46_14460 D-amino acid dehydrogenase 0.19 IAI46_20955 YhcH/YjgK/YiaL family protein low > 87
Erwinia tracheiphila SCR3 0.56 LU632_RS13070 D-amino acid dehydrogenase 0.20 LU632_RS04255 YhcH/YjgK/YiaL family protein low > 73
Rahnella sp. WP5 0.56 EX31_RS10485 D-amino acid dehydrogenase 0.34 EX31_RS12815 YhcH/YjgK/YiaL family protein low > 89
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_22535 D-amino acid dehydrogenase 0.20 IJEDHG_04470 YhcH/YjgK/YiaL family protein low > 61
Klebsiella michiganensis M5al 0.56 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.37 BWI76_RS03005 hypothetical protein low > 92
Pectobacterium carotovorum WPP14 0.56 HER17_RS11170 D-amino acid dehydrogenase 0.34 HER17_RS19505 YhcH/YjgK/YiaL family protein 0.58 38
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.36 EX28DRAFT_3453 YhcH/YjgK/YiaL family protein low > 76
Escherichia coli ECRC62 0.55 BNILDI_18890 dadA D-amino acid dehydrogenase 0.37 BNILDI_07405 tabA toxin-antitoxin biofilm protein TabA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_02500 D-amino acid dehydrogenase 0.36 OHPLBJKB_03785 Toxin-antitoxin biofilm protein TabA low > 74
Escherichia fergusonii Becca 0.55 EFB2_02743 D-amino acid dehydrogenase 0.36 EFB2_04282 Toxin-antitoxin biofilm protein TabA low > 86
Escherichia coli ECRC98 0.55 JDDGAC_06220 dadA D-amino acid dehydrogenase 0.37 JDDGAC_15485 tabA toxin-antitoxin biofilm protein TabA — —
Escherichia coli ECRC100 0.55 OKFHMN_28290 dadA D-amino acid dehydrogenase 0.37 OKFHMN_11845 tabA toxin-antitoxin biofilm protein TabA — —
Escherichia coli BW25113 0.55 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 0.37 b4252 yjgK orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECOR27 0.55 NOLOHH_20725 dadA D-amino acid dehydrogenase 0.37 NOLOHH_04105 tabA toxin-antitoxin biofilm protein TabA low > 76
Escherichia coli ECRC101 0.55 MCAODC_21880 dadA D-amino acid dehydrogenase 0.37 MCAODC_02350 tabA toxin-antitoxin biofilm protein TabA low > 87
Escherichia coli ECRC102 0.55 NIAGMN_27930 dadA D-amino acid dehydrogenase 0.37 NIAGMN_09695 tabA toxin-antitoxin biofilm protein TabA low > 80
Escherichia coli BL21 0.55 ECD_01164 D-amino acid dehydrogenase 0.36 ECD_04118 biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein low > 61
Escherichia coli ECRC99 0.55 KEDOAH_25305 dadA D-amino acid dehydrogenase 0.37 KEDOAH_16310 tabA toxin-antitoxin biofilm protein TabA — —
Escherichia coli ECOR38 0.55 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.36 HEPCGN_10030 YhcH/YjgK/YiaL family protein low > 88
Escherichia coli Nissle 1917 0.55 ECOLIN_RS07185 D-amino acid dehydrogenase 0.35 ECOLIN_RS24660 YhcH/YjgK/YiaL family protein — —
Klebsiella pneumoniae MKP103 0.55 KDGMDA_25050 D-amino acid dehydrogenase 0.35 KDGMDA_11470 YhcH/YjgK/YiaL family protein low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.33 GFF939 Protein yjgK low > 78
Dickeya dianthicola 67-19 0.55 HGI48_RS11195 D-amino acid dehydrogenase 0.33 HGI48_RS01905 YhcH/YjgK/YiaL family protein low > 71
Enterobacter sp. TBS_079 0.55 MPMX20_02699 D-amino acid dehydrogenase 0.37 MPMX20_00550 Toxin-antitoxin biofilm protein TabA low > 85
Dickeya dianthicola ME23 0.54 DZA65_RS11540 D-amino acid dehydrogenase 0.33 DZA65_RS01975 YhcH/YjgK/YiaL family protein low > 75
Dickeya dadantii 3937 0.54 DDA3937_RS11170 D-amino acid dehydrogenase 0.36 DDA3937_RS01930 YhcH/YjgK/YiaL family protein low > 74
Shewanella amazonensis SB2B 0.17 Sama_1533 D-amino-acid dehydrogenase (RefSeq) 0.17 Sama_0503 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.16 Shew_2360 D-hydroxyproline dehydrogenase (from data) 0.17 Shew_3353 hypothetical protein (RefSeq) low > 60

Not shown: 69 genomes with orthologs for CSW01_04065 only; 6 genomes with orthologs for CSW01_07815 only