Conservation of cofitness between CSW01_12875 and CSW01_06405 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 1.0 CSW01_06405 murein L,D-transpeptidase 0.48 9
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.24 OHPLBJKB_02742 hypothetical protein low > 74
Escherichia coli ECRC99 0.71 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.24 KEDOAH_22335 ldtD L,D-transpeptidase — —
Escherichia fergusonii Becca 0.71 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.24 EFB2_03139 putative L,D-transpeptidase YcbB low > 86
Escherichia coli ECOR38 0.71 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.24 HEPCGN_23125 ldtD L,D-transpeptidase low > 88
Escherichia coli BL21 0.71 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.24 ECD_00929 murein L,D-transpeptidase low > 61
Escherichia coli ECRC98 0.71 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.24 JDDGAC_09010 ldtD L,D-transpeptidase low > 87
Escherichia coli ECRC62 0.71 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.24 BNILDI_20215 ldtD L,D-transpeptidase low > 75
Escherichia coli ECOR27 0.71 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.25 NOLOHH_21960 ldtD L,D-transpeptidase low > 76
Escherichia coli ECRC100 0.71 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.24 OKFHMN_05400 ldtD L,D-transpeptidase low > 79
Escherichia coli ECRC101 0.71 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.24 MCAODC_24790 ldtD L,D-transpeptidase low > 87
Escherichia coli BW25113 0.71 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) 0.24 b0925 ycbB predicted carboxypeptidase (NCBI) low > 76
Klebsiella pneumoniae MKP103 0.71 KDGMDA_11310 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.25 KDGMDA_18050 L D-transpeptidase low > 95
Escherichia coli ECRC102 0.71 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.24 NIAGMN_03120 ldtD L,D-transpeptidase low > 80
Escherichia coli Nissle 1917 0.71 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.24 ECOLIN_RS04895 L,D-transpeptidase low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.70 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.25 GFF3682 L,D-transpeptidase YcbB low > 78
Enterobacter sp. TBS_079 0.70 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.26 MPMX20_01583 putative L,D-transpeptidase YcbB low > 85
Klebsiella michiganensis M5al 0.70 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.25 BWI76_RS09850 L,D-transpeptidase low > 92
Enterobacter asburiae PDN3 0.69 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.26 EX28DRAFT_2011 Uncharacterized protein conserved in bacteria low > 76
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS11350 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.26 PagCFBP13505_RS04550 L,D-transpeptidase low > 74
Dickeya dadantii 3937 0.69 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.25 DDA3937_RS12930 L,D-transpeptidase low > 74
Pectobacterium carotovorum WPP14 0.69 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.25 HER17_RS12045 L,D-transpeptidase low > 75
Pantoea sp. MT58 0.69 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.25 IAI47_12780 L,D-transpeptidase low > 76
Dickeya dianthicola 67-19 0.68 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.26 HGI48_RS13005 L,D-transpeptidase 0.53 69
Dickeya dianthicola ME23 0.68 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.26 DZA65_RS13465 L,D-transpeptidase low > 75
Erwinia tracheiphila HP pepo 2.2 0.67 IJEDHG_06780 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.25 IJEDHG_20385 ldtD L D-transpeptidase — —
Erwinia tracheiphila SCR3 0.67 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.25 LU632_RS09885 ldtD L,D-transpeptidase low > 73
Pseudomonas lactucae CFBP13502 0.63 GEMAOFIL_05114 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.16 GEMAOFIL_03475 putative L,D-transpeptidase YcbB low > 96
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.16 Pf6N2E2_1111 cell wall degradation protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.16 AO356_26185 peptidoglycan-binding protein low > 104
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase 0.17 OKGIIK_00395 Peptidoglycan-binding protein low > 53

Not shown: 60 genomes with orthologs for CSW01_12875 only; 2 genomes with orthologs for CSW01_06405 only