Conservation of cofitness between CSW01_07815 and CSW01_04065 in Vibrio cholerae E7946 ATCC 55056

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07815 YhcH/YjgK/YiaL family protein 1.0 CSW01_04065 D-amino acid dehydrogenase small subunit 0.52 4
Enterobacter sp. TBS_079 0.37 MPMX20_00550 Toxin-antitoxin biofilm protein TabA 0.55 MPMX20_02699 D-amino acid dehydrogenase low > 85
Klebsiella michiganensis M5al 0.37 BWI76_RS03005 hypothetical protein 0.56 BWI76_RS17735 D-amino acid dehydrogenase small subunit low > 92
Escherichia coli BW25113 0.37 b4252 yjgK orf, hypothetical protein (VIMSS) 0.55 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) low > 76
Escherichia coli ECRC98 0.37 JDDGAC_15485 tabA toxin-antitoxin biofilm protein TabA 0.55 JDDGAC_06220 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC62 0.37 BNILDI_07405 tabA toxin-antitoxin biofilm protein TabA 0.55 BNILDI_18890 dadA D-amino acid dehydrogenase low > 75
Escherichia coli ECRC102 0.37 NIAGMN_09695 tabA toxin-antitoxin biofilm protein TabA 0.55 NIAGMN_27930 dadA D-amino acid dehydrogenase low > 80
Escherichia coli ECRC99 0.37 KEDOAH_16310 tabA toxin-antitoxin biofilm protein TabA 0.55 KEDOAH_25305 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC100 0.37 OKFHMN_11845 tabA toxin-antitoxin biofilm protein TabA 0.55 OKFHMN_28290 dadA D-amino acid dehydrogenase — —
Escherichia coli ECOR27 0.37 NOLOHH_04105 tabA toxin-antitoxin biofilm protein TabA 0.55 NOLOHH_20725 dadA D-amino acid dehydrogenase low > 76
Escherichia coli ECRC101 0.37 MCAODC_02350 tabA toxin-antitoxin biofilm protein TabA 0.55 MCAODC_21880 dadA D-amino acid dehydrogenase low > 87
Escherichia coli BL21 0.36 ECD_04118 biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein 0.55 ECD_01164 D-amino acid dehydrogenase low > 61
Dickeya dadantii 3937 0.36 DDA3937_RS01930 YhcH/YjgK/YiaL family protein 0.54 DDA3937_RS11170 D-amino acid dehydrogenase low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_03785 Toxin-antitoxin biofilm protein TabA 0.55 OHPLBJKB_02500 D-amino acid dehydrogenase low > 74
Enterobacter asburiae PDN3 0.36 EX28DRAFT_3453 YhcH/YjgK/YiaL family protein 0.55 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) low > 76
Escherichia coli ECOR38 0.36 HEPCGN_10030 YhcH/YjgK/YiaL family protein 0.55 HEPCGN_24750 dadA D-amino acid dehydrogenase low > 88
Escherichia fergusonii Becca 0.36 EFB2_04282 Toxin-antitoxin biofilm protein TabA 0.55 EFB2_02743 D-amino acid dehydrogenase low > 86
Escherichia coli Nissle 1917 0.35 ECOLIN_RS24660 YhcH/YjgK/YiaL family protein 0.55 ECOLIN_RS07185 D-amino acid dehydrogenase — —
Klebsiella pneumoniae MKP103 0.35 KDGMDA_11470 YhcH/YjgK/YiaL family protein 0.55 KDGMDA_25050 D-amino acid dehydrogenase low > 95
Pectobacterium carotovorum WPP14 0.34 HER17_RS19505 YhcH/YjgK/YiaL family protein 0.56 HER17_RS11170 D-amino acid dehydrogenase 0.58 53
Rahnella sp. WP5 0.34 EX31_RS12815 YhcH/YjgK/YiaL family protein 0.56 EX31_RS10485 D-amino acid dehydrogenase low > 89
Dickeya dianthicola 67-19 0.33 HGI48_RS01905 YhcH/YjgK/YiaL family protein 0.55 HGI48_RS11195 D-amino acid dehydrogenase low > 71
Dickeya dianthicola ME23 0.33 DZA65_RS01975 YhcH/YjgK/YiaL family protein 0.54 DZA65_RS11540 D-amino acid dehydrogenase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF939 Protein yjgK 0.55 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 78
Pantoea agglomerans CFBP13505 P0401 0.25 PagCFBP13505_RS19295 YhcH/YjgK/YiaL family protein 0.57 PagCFBP13505_RS02725 D-amino acid dehydrogenase low > 74
Erwinia tracheiphila HP pepo 2.2 0.20 IJEDHG_04470 YhcH/YjgK/YiaL family protein 0.56 IJEDHG_22535 D-amino acid dehydrogenase low > 61
Erwinia tracheiphila SCR3 0.20 LU632_RS04255 YhcH/YjgK/YiaL family protein 0.56 LU632_RS13070 D-amino acid dehydrogenase low > 73
Serratia liquefaciens MT49 0.19 IAI46_20955 YhcH/YjgK/YiaL family protein 0.56 IAI46_14460 D-amino acid dehydrogenase low > 87
Shewanella amazonensis SB2B 0.17 Sama_0503 hypothetical protein (RefSeq) 0.17 Sama_1533 D-amino-acid dehydrogenase (RefSeq) low > 62
Shewanella loihica PV-4 0.17 Shew_3353 hypothetical protein (RefSeq) 0.16 Shew_2360 D-hydroxyproline dehydrogenase (from data) low > 60

Not shown: 6 genomes with orthologs for CSW01_07815 only; 69 genomes with orthologs for CSW01_04065 only