Conservation of cofitness between b4381 and b3934 in Escherichia coli BW25113

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4381 deoC deoxyribose-phosphate aldolase (NCBI) 1.0 b3934 cytR DNA-binding transcriptional dual regulator (NCBI) 0.46 2
Escherichia coli ECRC62 1.00 BNILDI_08035 deoC deoxyribose-phosphate aldolase 1.00 BNILDI_05660 cytR DNA-binding transcriptional regulator CytR — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS25150 deoxyribose-phosphate aldolase 1.00 ECOLIN_RS22650 DNA-binding transcriptional regulator CytR 0.81 1
Escherichia coli ECOR38 1.00 HEPCGN_09235 deoC deoxyribose-phosphate aldolase 1.00 HEPCGN_12370 cytR DNA-binding transcriptional regulator CytR low > 85
Escherichia fergusonii Becca 1.00 EFB2_04065 Deoxyribose-phosphate aldolase 1.00 EFB2_04684 HTH-type transcriptional repressor CytR low > 86
Escherichia coli ECRC99 1.00 KEDOAH_16920 deoC deoxyribose-phosphate aldolase 1.00 KEDOAH_14435 cytR DNA-binding transcriptional regulator CytR — —
Escherichia coli ECRC101 1.00 OKFHMN_11230 deoC deoxyribose-phosphate aldolase 1.00 OKFHMN_13725 cytR DNA-binding transcriptional regulator CytR — —
Escherichia coli ECOR27 1.00 NOLOHH_03565 deoC deoxyribose-phosphate aldolase 1.00 NOLOHH_05870 cytR DNA-binding transcriptional regulator CytR low > 57
Escherichia coli ECRC98 1.00 JDDGAC_14825 deoC deoxyribose-phosphate aldolase 1.00 JDDGAC_17350 cytR DNA-binding transcriptional regulator CytR — —
Escherichia coli BL21 1.00 ECD_04257 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked 1.00 ECD_03819 Anti-activator for CytR-CRP nucleoside utilization regulon low > 60
Escherichia coli ECRC102 1.00 NIAGMN_09080 deoC deoxyribose-phosphate aldolase 1.00 NIAGMN_11480 cytR DNA-binding transcriptional regulator CytR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03680 Deoxyribose-phosphate aldolase 1.00 OHPLBJKB_04117 HTH-type transcriptional repressor CytR low > 73
Escherichia coli ECRC101 1.00 MCAODC_01745 deoC deoxyribose-phosphate aldolase 1.00 MCAODC_04225 cytR DNA-binding transcriptional regulator CytR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF1043 Deoxyribose-phosphate aldolase (EC 4.1.2.4) 0.88 GFF2316 Transcriptional (co)regulator CytR low > 78
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3590 deoxyribose-phosphate aldolase 0.88 EX28DRAFT_4407 Transcriptional regulators low > 76
Enterobacter sp. TBS_079 0.87 MPMX20_00680 Deoxyribose-phosphate aldolase 0.88 MPMX20_04535 HTH-type transcriptional repressor CytR low > 85
Klebsiella michiganensis M5al 0.86 BWI76_RS04130 2-deoxyribose-5-phosphate aldolase 0.87 BWI76_RS00765 DNA-binding transcriptional regulator CytR low > 92
Pantoea sp. MT58 0.84 IAI47_03400 deoxyribose-phosphate aldolase 0.76 IAI47_00860 DNA-binding transcriptional regulator CytR low > 76
Rahnella sp. WP5 0.79 EX31_RS04065 deoxyribose-phosphate aldolase 0.72 EX31_RS14230 DNA-binding transcriptional regulator CytR low > 89
Vibrio cholerae E7946 ATCC 55056 0.79 CSW01_11910 2-deoxyribose-5-phosphate aldolase 0.66 CSW01_13525 DNA-binding transcriptional regulator CytR low > 62
Serratia liquefaciens MT49 0.78 IAI46_02910 deoxyribose-phosphate aldolase 0.75 IAI46_24560 DNA-binding transcriptional regulator CytR low > 86
Dickeya dadantii 3937 0.72 DDA3937_RS03135 deoxyribose-phosphate aldolase 0.66 DDA3937_RS00930 DNA-binding transcriptional regulator CytR low > 74
Pectobacterium carotovorum WPP14 0.71 HER17_RS18135 deoxyribose-phosphate aldolase 0.72 HER17_RS00865 DNA-binding transcriptional regulator CytR low > 75
Dickeya dianthicola ME23 0.70 DZA65_RS03305 deoxyribose-phosphate aldolase 0.67 DZA65_RS21490 DNA-binding transcriptional regulator CytR low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS03310 deoxyribose-phosphate aldolase 0.67 HGI48_RS20445 DNA-binding transcriptional regulator CytR low > 71
Erwinia tracheiphila SCR3 0.70 LU632_RS02515 deoC deoxyribose-phosphate aldolase 0.70 LU632_RS19660 cytR DNA-binding transcriptional regulator CytR low > 74
Shewanella amazonensis SB2B 0.63 Sama_0973 deoxyribose-phosphate aldolase (RefSeq) 0.32 Sama_0294 LacI family transcription regulator (RefSeq) low > 62
Agrobacterium fabrum C58 0.49 Atu0132 2-deoxyribose-5-phosphate aldolase 0.36 Atu4373 LacI family transcriptional regulator low > 89
Rhizobium sp. OAE497 0.46 ABIE40_RS00810 deoxyribose-phosphate aldolase 0.29 ABIE40_RS16795 LacI family DNA-binding transcriptional regulator low > 107
Azospirillum sp. SherDot2 0.43 MPMX19_04364 Deoxyribose-phosphate aldolase 0.23 MPMX19_04765 HTH-type transcriptional repressor CytR low > 112
Bosea sp. OAE506 0.38 ABIE41_RS03375 deoxyribose-phosphate aldolase 0.23 ABIE41_RS06440 LacI family DNA-binding transcriptional regulator low > 77
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS02080 deoxyribose-phosphate aldolase 0.24 HMPREF1181_RS05535 LacI family DNA-binding transcriptional regulator low > 56
Rhodospirillum rubrum S1H 0.18 Rru_A2303 Deoxyribose-phosphate aldolase (NCBI) 0.22 Rru_A1973 Transcriptional Regulator, LacI family (NCBI) low > 58

Not shown: 8 genomes with orthologs for b4381 only; 27 genomes with orthologs for b3934 only