Conservation of cofitness between b0898 and b2806 in Escherichia coli BW25113

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0898 ycaD putative MFS family transporter protein (NCBI) 1.0 b2806 ygdE predicted methyltransferase (NCBI) 0.22 7
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02770 putative MFS-type transporter YcaD 1.00 OHPLBJKB_00925 Ribosomal RNA large subunit methyltransferase M low > 73
Escherichia coli BL21 1.00 ECD_00902 putative MFS transporter, inner membrane protein 1.00 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC102 1.00 NIAGMN_03245 ycaD MFS transporter 1.00 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC98 1.00 JDDGAC_09335 ycaD MFS transporter 1.00 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC99 1.00 KEDOAH_22210 ycaD MFS transporter 1.00 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC101 1.00 MCAODC_24915 ycaD MFS transporter 1.00 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC101 1.00 OKFHMN_05525 ycaD MFS transporter 1.00 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECOR38 1.00 HEPCGN_22985 ycaD MFS transporter 1.00 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS04775 MFS transporter 1.00 ECOLIN_RS15640 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 52
Escherichia coli ECOR27 0.98 NOLOHH_22095 ycaD MFS transporter 1.00 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 57
Escherichia coli ECRC62 0.98 BNILDI_20350 ycaD MFS transporter 1.00 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia fergusonii Becca 0.97 EFB2_03163 putative MFS-type transporter YcaD 1.00 EFB2_01111 Ribosomal RNA large subunit methyltransferase M low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3654 Hypothetical MFS-type transporter protein YcaD 0.96 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 low > 78
Enterobacter sp. TBS_079 0.84 MPMX20_01559 putative MFS-type transporter YcaD 0.93 MPMX20_03669 Ribosomal RNA large subunit methyltransferase M low > 85
Enterobacter asburiae PDN3 0.83 EX28DRAFT_2035 Arabinose efflux permease 0.92 EX28DRAFT_2881 Predicted SAM-dependent methyltransferase low > 76
Klebsiella michiganensis M5al 0.78 BWI76_RS09695 MFS transporter 0.93 BWI76_RS22945 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 92
Pantoea sp. MT58 0.72 IAI47_12890 MFS transporter 0.81 IAI47_04035 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 76
Erwinia tracheiphila SCR3 0.70 LU632_RS09765 MFS transporter 0.78 LU632_RS06265 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Serratia liquefaciens MT49 0.68 IAI46_08600 MFS transporter 0.79 IAI46_20330 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 86
Rahnella sp. WP5 0.66 EX31_RS18475 MFS transporter 0.79 EX31_RS13100 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 89
Dickeya dianthicola ME23 0.60 DZA65_RS09960 MFS transporter 0.78 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Dickeya dadantii 3937 0.60 DDA3937_RS09640 MFS transporter 0.77 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Pectobacterium carotovorum WPP14 0.60 HER17_RS12335 MFS transporter 0.79 HER17_RS16405 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Dickeya dianthicola 67-19 0.59 HGI48_RS09650 MFS transporter 0.78 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.44 46
Shewanella loihica PV-4 0.19 Shew_3325 major facilitator transporter (RefSeq) 0.57 Shew_2761 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.19 MIT1002_02942 putative MFS-type transporter YcaD 0.40 MIT1002_01523 Ribosomal RNA large subunit methyltransferase M low > 70
Pseudomonas sp. RS175 0.18 PFR28_03261 putative MFS-type transporter YcaD 0.43 PFR28_01100 Ribosomal RNA large subunit methyltransferase M low > 88
Pseudomonas putida KT2440 0.18 PP_3082 putative Membrane protein 0.44 PP_2113 Ribosomal RNA large subunit methyltransferase M low > 96
Marinobacter adhaerens HP15 0.15 HP15_2851 transmembrane transport protein 0.37 HP15_2104 putative RNA 2'-O-ribose methyltransferase low > 73
Xanthomonas campestris pv. campestris strain 8004 0.14 Xcc-8004.1426.1 Transmembrane transport protein 0.37 Xcc-8004.4242.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 74
Pseudomonas sp. S08-1 0.07 OH686_13655 Uncharacterized MFS-type transporter 0.45 OH686_02095 23S rRNA (cytidine(2498)-2'-O)-methyltransferase low > 80

Not shown: 13 genomes with orthologs for b0898 only; 16 genomes with orthologs for b2806 only