Conservation of cofitness between PP_1155 and PP_2060 in Pseudomonas putida KT2440

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1155 YaiC/YhcK/ArdA family protein 1.0 PP_2060 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent 0.18 4
Pseudomonas simiae WCS417 0.64 PS417_21835 histidine kinase 0.54 PS417_09440 MerR family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS23435 diguanylate cyclase 0.54 PFLU_RS10090 redox-sensitive transcriptional activator SoxR low > 109
Pseudomonas fluorescens SBW25 0.62 PFLU_RS23435 diguanylate cyclase 0.54 PFLU_RS10090 redox-sensitive transcriptional activator SoxR low > 109
Pseudomonas sp. S08-1 0.54 OH686_04700 hypothetical protein 0.58 OH686_20615 redox-sensitive transcriptional activator SoxR low > 80
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_01080 histidine kinase 0.59 AO356_20930 MerR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_139 Two-component response regulator 0.58 Pf6N2E2_6074 Redox-sensitive transcriptional activator SoxR low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF4282 Protein YaiC 0.62 GFF1442 Redox-sensitive transcriptional activator SoxR low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_03289 putative diguanylate cyclase DgcC 0.63 OHPLBJKB_03978 Redox-sensitive transcriptional activator SoxR low > 73
Escherichia coli ECOR27 0.37 NOLOHH_01540 adrA diguanylate cyclase AdrA 0.63 NOLOHH_05120 soxR redox-sensitive transcriptional activator SoxR low > 75
Escherichia coli ECRC62 0.37 BNILDI_22955 adrA diguanylate cyclase AdrA 0.63 BNILDI_06405 soxR redox-sensitive transcriptional activator SoxR low > 75
Escherichia coli ECOR38 0.37 HEPCGN_07255 adrA diguanylate cyclase AdrA 0.63 HEPCGN_11485 soxR redox-sensitive transcriptional activator SoxR low > 87
Escherichia coli ECRC100 0.37 OKFHMN_08615 adrA diguanylate cyclase AdrA 0.63 OKFHMN_12870 soxR redox-sensitive transcriptional activator SoxR low > 80
Escherichia coli Nissle 1917 0.37 ECOLIN_RS02340 diguanylate cyclase AdrA 0.63 ECOLIN_RS23510 redox-sensitive transcriptional activator SoxR low > 55
Escherichia coli BW25113 0.37 b0385 yaiC predicted diguanylate cyclase (NCBI) 0.63 b4063 soxR DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing (NCBI) low > 76
Escherichia coli ECRC99 0.37 KEDOAH_19350 adrA diguanylate cyclase AdrA 0.63 KEDOAH_15280 soxR redox-sensitive transcriptional activator SoxR — —
Escherichia coli BL21 0.37 ECD_00332 diguanylate cyclase, cellulose regualtor 0.63 ECD_03935 redox-sensitive transcriptional activator of soxS; autorepressor low > 61
Escherichia coli ECRC102 0.37 NIAGMN_06670 adrA diguanylate cyclase AdrA 0.63 NIAGMN_10715 soxR redox-sensitive transcriptional activator SoxR — —
Escherichia coli ECRC98 0.37 JDDGAC_12270 adrA diguanylate cyclase AdrA 0.63 JDDGAC_16505 soxR redox-sensitive transcriptional activator SoxR low > 86
Escherichia coli ECRC101 0.37 MCAODC_27840 adrA diguanylate cyclase AdrA 0.63 MCAODC_03380 soxR redox-sensitive transcriptional activator SoxR low > 87
Escherichia fergusonii Becca 0.37 EFB2_03671 putative diguanylate cyclase DgcC 0.63 EFB2_04528 Redox-sensitive transcriptional activator SoxR low > 86
Enterobacter sp. TBS_079 0.35 MPMX20_00975 putative diguanylate cyclase DgcC 0.62 MPMX20_00282 Redox-sensitive transcriptional activator SoxR low > 85
Enterobacter asburiae PDN3 0.33 EX28DRAFT_2586 diguanylate cyclase (GGDEF) domain 0.61 EX28DRAFT_4241 redox-sensitive transcriptional activator SoxR low > 76
Pantoea sp. MT58 0.27 IAI47_19665 diguanylate cyclase 0.58 IAI47_17765 redox-sensitive transcriptional activator SoxR low > 76
Klebsiella michiganensis M5al 0.24 BWI76_RS21800 MASE2 domain/diguanylate cyclase 0.62 BWI76_RS02000 transcriptional regulator low > 92

Not shown: 14 genomes with orthologs for PP_1155 only; 13 genomes with orthologs for PP_2060 only