| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas putida KT2440 | 1.0 | PP_0804 | | Protein secretion ABC efflux system, permease and ATP-binding protein | 1.0 | PP_0803 | | Protein secretion ABC efflux system, membrane fusion protein | 0.92 | 3 |
| Pseudomonas sp. BP01 | 0.91 | JOY50_RS19235 | | type I secretion system permease/ATPase | 0.94 | JOY50_RS19240 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 84 |
| Pseudomonas sp. DMC3 | 0.70 | GFF1225 | | Toxin RTX-I translocation ATP-binding protein | 0.77 | GFF1224 | | Type I secretion system membrane fusion protein PrsE | low | > 89 |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_06680 | sunT | type I secretion system permease/ATPase | 0.57 | HEPCGN_06675 | emrA | hemolysin D | low | > 88 |
| Variovorax sp. SCN45 | 0.52 | GFF5853 | | Type I secretion system ATPase, LssB family LapB | 0.58 | GFF5852 | | Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC | low | > 127 |
| Escherichia coli ECRC99 | 0.52 | KEDOAH_19925 | sunT | type I secretion system permease/ATPase | 0.57 | KEDOAH_19930 | emrA | hemolysin D | — | — |
| Escherichia coli ECRC98 | 0.52 | JDDGAC_11690 | sunT | type I secretion system permease/ATPase | 0.57 | JDDGAC_11685 | emrA | hemolysin D | low | > 87 |
| Escherichia coli ECRC100 | 0.52 | OKFHMN_08045 | sunT | type I secretion system permease/ATPase | 0.57 | OKFHMN_08040 | emrA | hemolysin D | low | > 79 |
| Escherichia coli ECRC102 | 0.52 | NIAGMN_06095 | sunT | type I secretion system permease/ATPase | 0.57 | NIAGMN_06090 | emrA | hemolysin D | low | > 80 |
| Escherichia coli ECRC101 | 0.51 | MCAODC_27260 | sunT | type I secretion system permease/ATPase | 0.57 | MCAODC_27255 | emrA | hemolysin D | low | > 87 |
| Acinetobacter radioresistens SK82 | 0.51 | MPMX26_01962 | | Leukotoxin export ATP-binding protein LtxB | 0.56 | MPMX26_01961 | | Type I secretion system membrane fusion protein PrsE | — | — |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_02201 | | Toxin RTX-I translocation ATP-binding protein | 0.60 | MPMX20_03525 | | Type I secretion system membrane fusion protein PrsE | low | > 85 |
| Enterobacter asburiae PDN3 | 0.51 | EX28DRAFT_1344 | | type I secretion system ATPase, LssB family | 0.60 | EX28DRAFT_2734 | | Multidrug resistance efflux pump | low | > 76 |
| Klebsiella michiganensis M5al | 0.50 | BWI76_RS10020 | | ABC transporter | 0.58 | BWI76_RS10025 | | secretion protein HlyD | 0.61 | 1 |
| Acinetobacter baumannii LAC-4 | 0.50 | RR41_RS10415 | | type I secretion system permease/ATPase | 0.58 | RR41_RS10420 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 55 |
| Pseudomonas segetis P6 | 0.50 | ACVTMO_RS12640 | | type I secretion system permease/ATPase | 0.54 | ACVTMO_RS12635 | | HlyD family efflux transporter periplasmic adaptor subunit | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.49 | GFF4154 | | Type I secretion system ATPase, LssB family LapB | 0.63 | GFF4153 | | Type I secretion system, membrane fusion protein LapC | low | > 78 |
| Rhizobium sp. OAE497 | 0.48 | ABIE40_RS24895 | | type I secretion system permease/ATPase | 0.61 | ABIE40_RS24890 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 107 |
| Pectobacterium carotovorum WPP14 | 0.42 | HER17_RS16120 | | type I secretion system permease/ATPase | 0.51 | HER17_RS16125 | | HlyD family type I secretion periplasmic adaptor subunit | low | > 75 |
| Rahnella sp. WP5 | 0.41 | EX31_RS19260 | | type I secretion system permease/ATPase | 0.51 | EX31_RS19255 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.67 | 2 |
| Pantoea agglomerans CFBP13505 P0401 | 0.41 | PagCFBP13505_RS00490 | | type I secretion system permease/ATPase | 0.56 | PagCFBP13505_RS00495 | | HlyD family efflux transporter periplasmic adaptor subunit | low | > 74 |
| Pantoea sp. MT58 | 0.41 | IAI47_06505 | | type I secretion system permease/ATPase | 0.55 | IAI47_06510 | | HlyD family efflux transporter periplasmic adaptor subunit | 0.79 | 3 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS22835 | | type I secretion system permease/ATPase | 0.41 | RS_RS22840 | | secretion protein HlyD | low | > 80 |
| Sphingomonas koreensis DSMZ 15582 | 0.33 | Ga0059261_0543 | | type I secretion system ATPase, LssB family | 0.48 | Ga0059261_0542 | | type I secretion membrane fusion protein, HlyD family | low | > 68 |
Not shown: 3 genomes with orthologs for PP_0804 only; 7 genomes with orthologs for PP_0803 only