Conservation of cofitness between PP_2077 and PP_0396 in Pseudomonas putida KT2440

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2077 diaminopimelate decarboxylase 1.0 PP_0396 conserved protein of unknown function 0.35 5
Pantoea sp. MT58 0.60 IAI47_03860 diaminopimelate decarboxylase 0.56 IAI47_08920 YeaH/YhbH family protein low > 76
Acidovorax sp. GW101-3H11 0.60 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.49 Ac3H11_1146 FIG002076: hypothetical protein — —
Serratia liquefaciens MT49 0.59 IAI46_20520 diaminopimelate decarboxylase 0.56 IAI46_14380 YeaH/YhbH family protein low > 86
Pectobacterium carotovorum WPP14 0.59 HER17_RS03710 diaminopimelate decarboxylase 0.57 HER17_RS11155 YeaH/YhbH family protein low > 75
Dickeya dadantii 3937 0.58 DDA3937_RS17425 diaminopimelate decarboxylase 0.54 DDA3937_RS10240 YeaH/YhbH family protein low > 74
Enterobacter sp. TBS_079 0.58 MPMX20_03705 Diaminopimelate decarboxylase 0.57 MPMX20_01839 hypothetical protein low > 85
Dickeya dianthicola ME23 0.58 DZA65_RS18550 diaminopimelate decarboxylase 0.54 DZA65_RS10725 YeaH/YhbH family protein low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS17485 diaminopimelate decarboxylase 0.54 HGI48_RS10250 YeaH/YhbH family protein low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.56 GFF3472 UPF0229 protein YeaH low > 78
Enterobacter asburiae PDN3 0.58 EX28DRAFT_2916 diaminopimelate decarboxylase 0.57 EX28DRAFT_1777 Uncharacterized conserved protein low > 76
Escherichia coli ECRC99 0.58 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.56 KEDOAH_01405 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC101 0.58 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.56 OKFHMN_26705 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC98 0.58 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.56 JDDGAC_01280 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC102 0.58 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.56 NIAGMN_01360 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC101 0.58 MCAODC_10470 lysA diaminopimelate decarboxylase 0.56 MCAODC_18705 yeaH UPF0229 protein YeaH — —
Escherichia coli BW25113 0.58 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.56 b1784 yeaH yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Rahnella sp. WP5 0.58 EX31_RS13275 diaminopimelate decarboxylase 0.56 EX31_RS06255 YeaH/YhbH family protein low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_00891 Diaminopimelate decarboxylase 0.56 OHPLBJKB_01948 hypothetical protein low > 73
Escherichia coli BL21 0.58 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.56 ECD_01753 UPF0229 family protein — —
Escherichia coli ECRC62 0.57 BNILDI_10310 lysA diaminopimelate decarboxylase 0.56 BNILDI_16020 yeaH UPF0229 protein YeaH — —
Escherichia coli ECOR38 0.57 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.56 HEPCGN_05095 yeaH UPF0229 protein YeaH low > 85
Escherichia coli ECOR27 0.57 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.56 NOLOHH_17235 yeaH UPF0229 protein YeaH — —
Escherichia coli Nissle 1917 0.57 ECOLIN_RS15930 diaminopimelate decarboxylase 0.56 ECOLIN_RS09945 YeaH/YhbH family protein low > 52
Escherichia fergusonii Becca 0.57 EFB2_01045 Diaminopimelate decarboxylase 0.56 EFB2_02210 hypothetical protein low > 86
Klebsiella michiganensis M5al 0.57 BWI76_RS23360 diaminopimelate decarboxylase 0.56 BWI76_RS11480 hypothetical protein low > 92
Erwinia tracheiphila SCR3 0.56 LU632_RS06040 lysA diaminopimelate decarboxylase 0.55 LU632_RS13015 YeaH/YhbH family protein low > 74
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS35090 diaminopimelate decarboxylase 0.54 BPHYT_RS11185 hypothetical protein low > 109

Not shown: 2 genomes with orthologs for PP_2077 only; 35 genomes with orthologs for PP_0396 only