Conservation of cofitness between PP_2077 and PP_0395 in Pseudomonas putida KT2440

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2077 diaminopimelate decarboxylase 1.0 PP_0395 putative type IV piliation protein 0.35 4
Pantoea sp. MT58 0.60 IAI47_03860 diaminopimelate decarboxylase 0.67 IAI47_08885 SpoVR family protein low > 76
Acidovorax sp. GW101-3H11 0.60 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.63 Ac3H11_1147 FIG004684: SpoVR-like protein — —
Serratia liquefaciens MT49 0.59 IAI46_20520 diaminopimelate decarboxylase 0.67 IAI46_14470 SpoVR family protein low > 86
Pectobacterium carotovorum WPP14 0.59 HER17_RS03710 diaminopimelate decarboxylase 0.68 HER17_RS11210 SpoVR family protein low > 75
Dickeya dadantii 3937 0.58 DDA3937_RS17425 diaminopimelate decarboxylase 0.68 DDA3937_RS11175 SpoVR family protein low > 74
Enterobacter sp. TBS_079 0.58 MPMX20_03705 Diaminopimelate decarboxylase 0.67 MPMX20_02700 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.58 EX28DRAFT_2916 diaminopimelate decarboxylase 0.68 EX28DRAFT_0765 Uncharacterized conserved protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.68 GFF2805 FIG004684: SpoVR-like protein low > 78
Dickeya dianthicola ME23 0.58 DZA65_RS18550 diaminopimelate decarboxylase 0.68 DZA65_RS11545 SpoVR family protein low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS17485 diaminopimelate decarboxylase 0.68 HGI48_RS11200 SpoVR family protein low > 71
Escherichia coli ECRC99 0.58 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.67 KEDOAH_25300 ycgB SpoVR family protein — —
Escherichia coli ECRC98 0.58 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.67 JDDGAC_06225 ycgB SpoVR family protein — —
Escherichia coli ECRC101 0.58 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.67 OKFHMN_28285 ycgB SpoVR family protein — —
Escherichia coli ECRC101 0.58 MCAODC_10470 lysA diaminopimelate decarboxylase 0.67 MCAODC_21885 ycgB SpoVR family protein — —
Escherichia coli ECRC102 0.58 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.67 NIAGMN_27935 ycgB SpoVR family protein — —
Rahnella sp. WP5 0.58 EX31_RS13275 diaminopimelate decarboxylase 0.67 EX31_RS10500 SpoVR family protein low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_00891 Diaminopimelate decarboxylase 0.67 OHPLBJKB_02501 hypothetical protein low > 73
Escherichia coli BW25113 0.58 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.67 b1188 ycgB ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli BL21 0.58 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.67 ECD_01163 SpoVR family stationary phase protein low > 60
Escherichia coli ECOR27 0.57 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.67 NOLOHH_20730 ycgB SpoVR family protein low > 57
Escherichia coli ECOR38 0.57 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.67 HEPCGN_24745 ycgB SpoVR family protein low > 85
Escherichia coli ECRC62 0.57 BNILDI_10310 lysA diaminopimelate decarboxylase 0.67 BNILDI_18895 ycgB SpoVR family protein — —
Escherichia fergusonii Becca 0.57 EFB2_01045 Diaminopimelate decarboxylase 0.67 EFB2_02744 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.57 ECOLIN_RS15930 diaminopimelate decarboxylase 0.67 ECOLIN_RS07180 SpoVR family protein — —
Klebsiella michiganensis M5al 0.57 BWI76_RS23360 diaminopimelate decarboxylase 0.68 BWI76_RS17740 SpoVR family protein low > 92
Erwinia tracheiphila SCR3 0.56 LU632_RS06040 lysA diaminopimelate decarboxylase 0.67 LU632_RS13075 SpoVR family protein low > 74
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS35090 diaminopimelate decarboxylase 0.66 BPHYT_RS11180 SpoVR family protein low > 109

Not shown: 2 genomes with orthologs for PP_2077 only; 35 genomes with orthologs for PP_0395 only