| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli ECRC98 | 1.0 | JDDGAC_09800 | ldtB | L,D-transpeptidase | 1.0 | JDDGAC_25060 | rseC | SoxR-reducing system protein RseC | 0.97 | 1 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02894 | | putative L,D-transpeptidase YbiS | 1.00 | OHPLBJKB_01137 | | Protein RseC | low | > 73 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_20795 | ldtB | L,D-transpeptidase | 1.00 | BNILDI_11870 | rseC | SoxR-reducing system protein RseC | low | > 75 |
| Escherichia fergusonii Becca | 1.00 | EFB2_03286 | | putative L,D-transpeptidase YbiS | 0.99 | EFB2_01326 | | Protein RseC | low | > 86 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_06165 | ldtB | L,D-transpeptidase | 1.00 | OKFHMN_21395 | rseC | SoxR-reducing system protein RseC | low | > 80 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_01875 | ldtB | L,D-transpeptidase | 0.99 | HEPCGN_20540 | rseC | SoxR-reducing system protein RseC | low | > 87 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_25380 | ldtB | L,D-transpeptidase | 1.00 | MCAODC_11925 | rseC | SoxR-reducing system protein RseC | low | > 87 |
| Escherichia coli BW25113 | 1.00 | b0819 | ybiS | hypothetical protein (NCBI) | 1.00 | b2570 | rseC | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_22515 | ldtB | L,D-transpeptidase | 1.00 | NOLOHH_13070 | rseC | SoxR-reducing system protein RseC | low | > 75 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_04210 | ldtB | L,D-transpeptidase | 1.00 | NIAGMN_19165 | rseC | SoxR-reducing system protein RseC | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS04365 | | L,D-transpeptidase | 0.99 | ECOLIN_RS14545 | | SoxR-reducing system protein RseC | — | — |
| Escherichia coli BL21 | 1.00 | ECD_00786 | | L,D-transpeptidase linking Lpp to murein | 1.00 | ECD_02464 | | SoxR iron-sulfur cluster reduction factor component | low | > 61 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_21745 | ldtB | L,D-transpeptidase | 1.00 | KEDOAH_06830 | rseC | SoxR-reducing system protein RseC | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.94 | GFF716 | | L,D-transpeptidase YbiS | 0.84 | GFF2110 | | Sigma factor RpoE regulatory protein RseC | low | > 78 |
| Klebsiella michiganensis M5al | 0.93 | BWI76_RS09030 | | transpeptidase | 0.77 | BWI76_RS21340 | | SoxR reducing system protein RseC | low | > 92 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_01456 | | putative L,D-transpeptidase YbiS | 0.76 | MPMX20_03441 | | Protein RseC | low | > 85 |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2148 | | Uncharacterized protein conserved in bacteria | 0.76 | EX28DRAFT_0075 | | positive regulator of sigma(E), RseC/MucC | low | > 76 |
| Serratia liquefaciens MT49 | 0.73 | IAI46_02600 | | L,D-transpeptidase family protein | 0.53 | IAI46_19570 | | SoxR-reducing system protein RseC | low | > 86 |
| Rahnella sp. WP5 | 0.73 | EX31_RS10780 | | L,D-transpeptidase family protein | 0.57 | EX31_RS21815 | | SoxR-reducing system protein RseC | low | > 89 |
| Pantoea sp. MT58 | 0.72 | IAI47_13415 | | L,D-transpeptidase family protein | 0.63 | IAI47_04865 | | SoxR-reducing system protein RseC | low | > 76 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS03570 | | L,D-transpeptidase family protein | 0.40 | DDA3937_RS15750 | | SoxR-reducing system protein RseC | low | > 74 |
| Dickeya dianthicola ME23 | 0.69 | DZA65_RS03790 | | L,D-transpeptidase family protein | 0.38 | DZA65_RS16915 | | SoxR-reducing system protein RseC | — | — |
| Dickeya dianthicola 67-19 | 0.69 | HGI48_RS03670 | | L,D-transpeptidase family protein | 0.39 | HGI48_RS15835 | | SoxR-reducing system protein RseC | — | — |
| Pectobacterium carotovorum WPP14 | 0.68 | HER17_RS17580 | | L,D-transpeptidase family protein | 0.46 | HER17_RS05795 | | SoxR-reducing system protein RseC | low | > 75 |
| Shewanella oneidensis MR-1 | 0.59 | SO3748 | | LysM domain protein (NCBI ptt file) | 0.22 | SO1345 | rseC | sigma-E factor regulatory protein RseC (NCBI ptt file) | — | — |
| Pseudomonas stutzeri RCH2 | 0.32 | Psest_2334 | | Uncharacterized protein conserved in bacteria | 0.20 | Psest_3097 | | Positive regulator of sigma E activity | — | — |
Not shown: 7 genomes with orthologs for JDDGAC_09800 only; 6 genomes with orthologs for JDDGAC_25060 only